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SH3BGR
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:44.9 nTPM
HPA:44.9 nTPM
GTEx:40.8 nTPM
FANTOM5:35.2 Scaled Tags Per Million
Pig:14.9 nTPM

CAUDATE - Antibody stainingi
Antibody CAB003685
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.3
2289 Male, age 61, right hemisphere 49.8
2481 Female, age 94, left hemisphere 45.6
1857 Female, age 85, left hemisphere 43.8
2846 Female, age 79, unknown 42.0
2290 Female, age 72, unknown 41.9
1854 Male, age 80, left hemisphere 41.5
1781 Male, age 74, unknown 41.1
2288 Male, age 75, left hemisphere 40.6
Claustrum
nTPM: 40.0
2645 Female, age 72, unknown 42.0
2292 Female, age 85, both hemispheres 41.9
2196 Female, age 79, unknown 41.4
1956 Male, age 74, unknown 40.9
2392 Female, age 94, both hemispheres 40.5
2491 Male, age 75, both hemispheres 39.7
2284 Female, age 91, both hemispheres 39.1
2198 Male, age 80, both hemispheres 38.9
2568 Male, age 61, both hemispheres 35.5
Globus pallidus, externus
nTPM: 44.9
2567 Female, age 72, unknown 48.5
2646 Male, age 61, right hemisphere 47.4
1996 Male, age 80, right hemisphere 45.4
2772 Female, age 79, unknown 42.5
2395 Male, age 75, both hemispheres 40.7
Globus pallidus, internus
nTPM: 42.9
2483 Female, age 94, right hemisphere 45.3
2566 Female, age 72, unknown 44.4
2111 Female, age 85, right hemisphere 43.6
1818 Male, age 74, unknown 42.6
2778 Female, age 91, both hemispheres 42.3
2287 Male, age 75, right hemisphere 41.6
2037 Male, age 80, right hemisphere 40.3
Nucleus accumbens
nTPM: 41.7
1806 Female, age 85, left hemisphere 45.1
1783 Male, age 74, unknown 43.5
2698 Female, age 72, unknown 43.0
2391 Female, age 94, left hemisphere 42.4
1856 Female, age 91, right hemisphere 41.3
2732 Male, age 80, right hemisphere 40.1
2286 Male, age 75, left hemisphere 39.2
2824 Male, age 61, right hemisphere 38.9
Nucleus basalis of Meynert
nTPM: 42.3
2393 Male, age 80, right hemisphere 44.4
2569 Male, age 61, both hemispheres 44.1
2821 Male, age 75, both hemispheres 40.8
2484 Female, age 94, left hemisphere 40.0
Nucleus of the diagonal band
nTPM: 39.1
1812 Female, age 91, both hemispheres 41.1
2195 Female, age 85, both hemispheres 40.8
2775 Male, age 80, right hemisphere 40.1
1979 Male, age 74, unknown 38.6
2029 Male, age 61, right hemisphere 35.0
Olfactory tubercle
nTPM: 38.7
1846 Male, age 80, right hemisphere 40.5
2856 Male, age 75, right hemisphere 38.6
2487 Female, age 94, left hemisphere 38.0
1998 Female, age 91, both hemispheres 37.8
Putamen
nTPM: 43.4
2647 Male, age 75, left hemisphere 46.1
2489 Female, age 72, unknown 44.8
2482 Female, age 94, left hemisphere 44.4
1829 Male, age 74, unknown 43.6
1937 Female, age 91, right hemisphere 42.6
1838 Male, age 80, right hemisphere 42.3
2466 Female, age 79, unknown 40.0
Septal nuclei
nTPM: 38.9
2629 Female, age 94, right hemisphere 40.9
2199 Male, age 80, right hemisphere 39.9
1960 Male, age 74, unknown 38.9
2059 Female, age 85, both hemispheres 38.7
2394 Male, age 61, left hemisphere 38.7
2009 Female, age 91, both hemispheres 38.5
2031 Female, age 72, unknown 36.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.8
Samples: 246

Max nTPM: 229.8
Min nTPM: 19.6
Std nTPM: 17.1
Median nTPM: 34.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 229.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 154.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 88.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 83.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 69.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 67.6
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 66.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 64.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 62.4
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 60.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 57.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.7
Samples: 246

Max nTPM: 197.2
Min nTPM: 11.6
Std nTPM: 14.1
Median nTPM: 36.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 197.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 95.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 85.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 80.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 73.7
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 62.8
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 61.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 61.1
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 60.6
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 58.4
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 57.8
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Brain - Putamen (basal ganglia)
Average nTPM: 40.8
Samples: 205

Max nTPM: 85.0
Min nTPM: 21.0
Std nTPM: 9.7
Median nTPM: 38.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 85.0
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 84.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 71.5
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 68.4
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 67.3
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 67.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 64.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 64.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 63.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 62.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 61.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.1
FF:10164-103B2 76 years, female 29.1
Globus pallidus
Scaled Tags Per Million: 27.1
FF:10175-103C4 60 years, female 27.6
FF:10161-103A8 76 years, female 26.7
Nucleus accumbens
Scaled Tags Per Million: 18.4
FF:10037-101F1 23-56 years, mixed 18.4
Putamen
Scaled Tags Per Million: 35.2
FF:10176-103C5 60 years, female 35.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.9
Pig sample Sample description nTPM
Caudate
nTPM: 13.1
Samples: 4

Max nTPM: 15.0
Min nTPM: 11.6
Sample A Female 14.2
Sample B Female 11.7
Sample C Male 15.0
Sample D Male 11.6
Putamen
nTPM: 14.9
Samples: 4

Max nTPM: 17.2
Min nTPM: 11.3
Sample A Female 13.9
Sample B Female 11.3
Sample C Male 17.1
Sample D Male 17.2
Septum
nTPM: 14.0
Samples: 4

Max nTPM: 19.7
Min nTPM: 10.2
Sample A Female 14.4
Sample B Female 10.2
Sample C Male 19.7
Sample D Male 11.5
Ventral pallidum
nTPM: 12.9
Samples: 4

Max nTPM: 19.7
Min nTPM: 8.0
Sample A Female 13.1
Sample B Female 8.0
Sample C Male 19.7
Sample D Male 10.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.