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L3MBTL1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.5 nTPM
HPA:8.5 nTPM
GTEx:8.6 nTPM
FANTOM5:17.4 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.5
2289 Male, age 61, right hemisphere 6.4
1781 Male, age 74, unknown 6.0
2288 Male, age 75, left hemisphere 5.7
1854 Male, age 80, left hemisphere 5.5
2290 Female, age 72, unknown 5.5
2481 Female, age 94, left hemisphere 5.4
2846 Female, age 79, unknown 4.8
1857 Female, age 85, left hemisphere 4.6
Claustrum
nTPM: 8.5
2645 Female, age 72, unknown 10.3
2568 Male, age 61, both hemispheres 9.4
2292 Female, age 85, both hemispheres 9.3
2491 Male, age 75, both hemispheres 9.1
2198 Male, age 80, both hemispheres 8.5
2284 Female, age 91, both hemispheres 8.0
2392 Female, age 94, both hemispheres 7.4
2196 Female, age 79, unknown 7.2
1956 Male, age 74, unknown 7.1
Globus pallidus, externus
nTPM: 5.5
2646 Male, age 61, right hemisphere 6.0
2395 Male, age 75, both hemispheres 5.8
2567 Female, age 72, unknown 5.6
2772 Female, age 79, unknown 5.1
1996 Male, age 80, right hemisphere 5.0
Globus pallidus, internus
nTPM: 5.3
2111 Female, age 85, right hemisphere 5.8
2566 Female, age 72, unknown 5.8
2037 Male, age 80, right hemisphere 5.4
1818 Male, age 74, unknown 5.2
2287 Male, age 75, right hemisphere 5.1
2483 Female, age 94, right hemisphere 5.0
2778 Female, age 91, both hemispheres 5.0
Nucleus accumbens
nTPM: 5.6
2732 Male, age 80, right hemisphere 7.1
2824 Male, age 61, right hemisphere 6.0
1806 Female, age 85, left hemisphere 5.7
2698 Female, age 72, unknown 5.6
2286 Male, age 75, left hemisphere 5.5
1783 Male, age 74, unknown 5.3
2391 Female, age 94, left hemisphere 4.9
1856 Female, age 91, right hemisphere 4.8
Nucleus basalis of Meynert
nTPM: 5.2
2821 Male, age 75, both hemispheres 5.6
2569 Male, age 61, both hemispheres 5.3
2484 Female, age 94, left hemisphere 5.1
2393 Male, age 80, right hemisphere 4.9
Nucleus of the diagonal band
nTPM: 8.0
2029 Male, age 61, right hemisphere 9.1
2775 Male, age 80, right hemisphere 8.5
2195 Female, age 85, both hemispheres 8.0
1979 Male, age 74, unknown 7.8
1812 Female, age 91, both hemispheres 6.5
Olfactory tubercle
nTPM: 8.2
2487 Female, age 94, left hemisphere 9.0
1998 Female, age 91, both hemispheres 8.6
2856 Male, age 75, right hemisphere 8.3
1846 Male, age 80, right hemisphere 6.8
Putamen
nTPM: 5.2
2647 Male, age 75, left hemisphere 5.8
2466 Female, age 79, unknown 5.3
1838 Male, age 80, right hemisphere 5.2
2489 Female, age 72, unknown 5.2
1937 Female, age 91, right hemisphere 5.1
1829 Male, age 74, unknown 4.9
2482 Female, age 94, left hemisphere 4.8
Septal nuclei
nTPM: 7.6
1960 Male, age 74, unknown 8.5
2031 Female, age 72, unknown 7.9
2059 Female, age 85, both hemispheres 7.6
2009 Female, age 91, both hemispheres 7.5
2629 Female, age 94, right hemisphere 7.4
2199 Male, age 80, right hemisphere 7.2
2394 Male, age 61, left hemisphere 7.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 8.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.7
Samples: 246

Max nTPM: 11.4
Min nTPM: 2.0
Std nTPM: 1.8
Median nTPM: 6.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 11.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 11.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 10.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 10.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 10.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 10.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 10.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 10.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 10.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 9.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 9.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 8.6
Samples: 246

Max nTPM: 30.0
Min nTPM: 2.0
Std nTPM: 3.1
Median nTPM: 8.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 30.0
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 17.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 17.8
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 16.2
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 15.9
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 15.7
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 15.1
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 14.9
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 14.6
GTEX-1H3NZ-0011-R6b-SM-A9G1N 60-69 years, male 14.3
GTEX-1HBPI-0011-R6b-SM-A9G1T 50-59 years, male 14.2
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Brain - Putamen (basal ganglia)
Average nTPM: 6.1
Samples: 205

Max nTPM: 11.7
Min nTPM: 1.5
Std nTPM: 1.8
Median nTPM: 6.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 11.7
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 11.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 10.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 10.3
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 10.0
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 9.7
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 9.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 9.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 8.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 8.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 8.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.0
FF:10164-103B2 76 years, female 13.0
Globus pallidus
Scaled Tags Per Million: 17.4
FF:10161-103A8 76 years, female 20.7
FF:10175-103C4 60 years, female 14.2
Nucleus accumbens
Scaled Tags Per Million: 14.8
FF:10037-101F1 23-56 years, mixed 14.8
Putamen
Scaled Tags Per Million: 14.7
FF:10176-103C5 60 years, female 14.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.