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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:9.6 nTPM
FANTOM5:57.8 Scaled Tags Per Million
Pig:11.0 nTPM
Mouse:7.3 nTPM
Allen mouse:4.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.3
2481 Female, age 94, left hemisphere 11.9
2288 Male, age 75, left hemisphere 10.2
2290 Female, age 72, unknown 9.4
2289 Male, age 61, right hemisphere 9.2
1781 Male, age 74, unknown 8.5
1854 Male, age 80, left hemisphere 7.8
2846 Female, age 79, unknown 5.8
1857 Female, age 85, left hemisphere 3.4
Claustrum
nTPM: 19.2
2568 Male, age 61, both hemispheres 27.2
2198 Male, age 80, both hemispheres 24.9
2284 Female, age 91, both hemispheres 22.1
2292 Female, age 85, both hemispheres 22.0
2645 Female, age 72, unknown 21.3
2196 Female, age 79, unknown 17.8
1956 Male, age 74, unknown 13.2
2491 Male, age 75, both hemispheres 12.6
2392 Female, age 94, both hemispheres 12.1
Globus pallidus, externus
nTPM: 12.2
2646 Male, age 61, right hemisphere 17.9
1996 Male, age 80, right hemisphere 13.3
2772 Female, age 79, unknown 11.8
2395 Male, age 75, both hemispheres 9.9
2567 Female, age 72, unknown 7.9
Globus pallidus, internus
nTPM: 12.6
2287 Male, age 75, right hemisphere 16.1
1818 Male, age 74, unknown 13.1
2566 Female, age 72, unknown 12.9
2037 Male, age 80, right hemisphere 12.6
2778 Female, age 91, both hemispheres 12.6
2483 Female, age 94, right hemisphere 11.7
2111 Female, age 85, right hemisphere 8.9
Nucleus accumbens
nTPM: 4.5
2286 Male, age 75, left hemisphere 7.6
2391 Female, age 94, left hemisphere 6.5
2732 Male, age 80, right hemisphere 4.9
1806 Female, age 85, left hemisphere 3.5
2698 Female, age 72, unknown 3.5
1783 Male, age 74, unknown 3.4
2824 Male, age 61, right hemisphere 3.4
1856 Female, age 91, right hemisphere 3.2
Nucleus basalis of Meynert
nTPM: 16.3
2569 Male, age 61, both hemispheres 22.1
2821 Male, age 75, both hemispheres 20.8
2484 Female, age 94, left hemisphere 16.3
2393 Male, age 80, right hemisphere 6.1
Nucleus of the diagonal band
nTPM: 4.8
1812 Female, age 91, both hemispheres 7.3
2195 Female, age 85, both hemispheres 5.5
2029 Male, age 61, right hemisphere 5.0
2775 Male, age 80, right hemisphere 3.8
1979 Male, age 74, unknown 2.4
Olfactory tubercle
nTPM: 7.6
1846 Male, age 80, right hemisphere 13.1
2856 Male, age 75, right hemisphere 7.7
1998 Female, age 91, both hemispheres 6.0
2487 Female, age 94, left hemisphere 3.5
Putamen
nTPM: 7.3
2647 Male, age 75, left hemisphere 14.6
2482 Female, age 94, left hemisphere 8.7
2489 Female, age 72, unknown 7.8
1829 Male, age 74, unknown 6.2
1838 Male, age 80, right hemisphere 5.8
2466 Female, age 79, unknown 4.7
1937 Female, age 91, right hemisphere 3.5
Septal nuclei
nTPM: 4.7
2031 Female, age 72, unknown 7.6
2394 Male, age 61, left hemisphere 5.1
2629 Female, age 94, right hemisphere 4.4
2059 Female, age 85, both hemispheres 4.1
2009 Female, age 91, both hemispheres 4.0
2199 Male, age 80, right hemisphere 4.0
1960 Male, age 74, unknown 3.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.6
Samples: 246

Max nTPM: 33.6
Min nTPM: 1.9
Std nTPM: 5.0
Median nTPM: 8.1
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 33.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 27.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 27.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 25.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 23.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 23.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 22.3
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 21.4
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 20.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 19.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 19.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.7
Samples: 246

Max nTPM: 28.5
Min nTPM: 1.1
Std nTPM: 3.9
Median nTPM: 4.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 28.5
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 26.3
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 24.2
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 21.3
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 19.6
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 16.4
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 16.3
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 15.9
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 14.7
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 13.7
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 13.3
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Brain - Putamen (basal ganglia)
Average nTPM: 8.4
Samples: 205

Max nTPM: 31.5
Min nTPM: 1.4
Std nTPM: 4.6
Median nTPM: 6.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 31.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 26.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 24.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 21.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 20.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 19.4
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 19.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 18.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 18.3
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 18.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 18.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.6
FF:10164-103B2 76 years, female 30.6
Globus pallidus
Scaled Tags Per Million: 57.8
FF:10161-103A8 76 years, female 69.9
FF:10175-103C4 60 years, female 45.7
Nucleus accumbens
Scaled Tags Per Million: 44.8
FF:10037-101F1 23-56 years, mixed 44.8
Putamen
Scaled Tags Per Million: 8.2
FF:10176-103C5 60 years, female 8.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 11.0
Pig sample Sample description nTPM
Caudate
nTPM: 3.6
Samples: 4

Max nTPM: 6.9
Min nTPM: 1.9
Sample A Female 6.9
Sample B Female 1.9
Sample C Male 3.0
Sample D Male 2.5
Putamen
nTPM: 3.8
Samples: 4

Max nTPM: 7.2
Min nTPM: 2.2
Sample A Female 7.2
Sample B Female 2.2
Sample C Male 2.9
Sample D Male 2.7
Septum
nTPM: 10.9
Samples: 4

Max nTPM: 32.1
Min nTPM: 3.7
Sample A Female 3.9
Sample B Female 3.7
Sample C Male 32.1
Sample D Male 4.0
Ventral pallidum
nTPM: 9.4
Samples: 4

Max nTPM: 28.1
Min nTPM: 2.1
Sample A Female 2.1
Sample B Female 4.0
Sample C Male 28.1
Sample D Male 3.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.6
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.0
Sample A Male 3.2
Sample B Male 2.0
Sample C Female 2.1
Sample D Female 2.9
Septum
nTPM: 7.3
Samples: 4

Max nTPM: 9.2
Min nTPM: 5.8
Sample A Male 9.2
Sample B Male 6.0
Sample C Female 5.8
Sample D Female 8.3
Ventral forebrain
nTPM: 3.4
Samples: 4

Max nTPM: 4.4
Min nTPM: 2.7
Sample A Male 2.9
Sample B Male 3.7
Sample C Female 4.4
Sample D Female 2.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.6
308055507 Antisense, RP_140710_01_A03, Mouse strain C57BL/6J (56 days, male) 12.7
112646890 Antisense, RP_110407_01_A05, Mouse strain C57BL/6J (56 days, male) 1.0
724 Sense, RPS_Baylor_36951, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 3.7
308055507 Antisense, RP_140710_01_A03, Mouse strain C57BL/6J (56 days, male) 9.2
112646890 Antisense, RP_110407_01_A05, Mouse strain C57BL/6J (56 days, male) 1.8
724 Sense, RPS_Baylor_36951, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.