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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:1.9 nTPM
HPA:1.9 nTPM
GTEx:1.4 nTPM
FANTOM5:7.1 Scaled Tags Per Million
Pig:18.6 nTPM
Mouse:47.1 nTPM
Allen mouse:4.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA062262Antibody CAB005872
Glial cells LowNot detected
Neuronal cells Not detectedNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
2289 Male, age 61, right hemisphere 1.0
1854 Male, age 80, left hemisphere 0.2
2288 Male, age 75, left hemisphere 0.2
2290 Female, age 72, unknown 0.2
1857 Female, age 85, left hemisphere 0.1
1781 Male, age 74, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 0.0
2196 Female, age 79, unknown 0.1
1956 Male, age 74, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2491 Male, age 75, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.1
2646 Male, age 61, right hemisphere 0.3
2395 Male, age 75, both hemispheres 0.1
1996 Male, age 80, right hemisphere 0.0
2567 Female, age 72, unknown 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.1
2566 Female, age 72, unknown 0.3
2778 Female, age 91, both hemispheres 0.2
2287 Male, age 75, right hemisphere 0.1
2483 Female, age 94, right hemisphere 0.1
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
Nucleus accumbens
nTPM: 0.8
2732 Male, age 80, right hemisphere 3.2
2824 Male, age 61, right hemisphere 1.3
1856 Female, age 91, right hemisphere 0.7
2286 Male, age 75, left hemisphere 0.6
1806 Female, age 85, left hemisphere 0.5
2698 Female, age 72, unknown 0.4
1783 Male, age 74, unknown 0.0
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.2
2821 Male, age 75, both hemispheres 0.4
2393 Male, age 80, right hemisphere 0.2
2484 Female, age 94, left hemisphere 0.2
2569 Male, age 61, both hemispheres 0.2
Nucleus of the diagonal band
nTPM: 1.9
1979 Male, age 74, unknown 9.6
1812 Female, age 91, both hemispheres 0.0
2029 Male, age 61, right hemisphere 0.0
2195 Female, age 85, both hemispheres 0.0
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 0.0
2487 Female, age 94, left hemisphere 0.1
1846 Male, age 80, right hemisphere 0.0
1998 Female, age 91, both hemispheres 0.0
2856 Male, age 75, right hemisphere 0.0
Putamen
nTPM: 0.1
1838 Male, age 80, right hemisphere 0.3
2647 Male, age 75, left hemisphere 0.3
1937 Female, age 91, right hemisphere 0.2
2482 Female, age 94, left hemisphere 0.1
2489 Female, age 72, unknown 0.1
1829 Male, age 74, unknown 0.0
2466 Female, age 79, unknown 0.0
Septal nuclei
nTPM: 1.4
2199 Male, age 80, right hemisphere 6.3
2394 Male, age 61, left hemisphere 2.7
2059 Female, age 85, both hemispheres 0.8
2009 Female, age 91, both hemispheres 0.2
1960 Male, age 74, unknown 0.0
2031 Female, age 72, unknown 0.0
2629 Female, age 94, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.2
Samples: 246

Max nTPM: 3.3
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 3.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 0.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 0.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 0.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 0.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 0.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 0.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 0.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.4
Samples: 246

Max nTPM: 142.1
Min nTPM: 0.0
Std nTPM: 9.1
Median nTPM: 0.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 142.1
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 21.8
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 18.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 9.2
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 3.3
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 3.1
GTEX-13OW6-0011-R6b-SM-5L3GR 50-59 years, male 2.7
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 2.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 2.4
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 2.1
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 2.0
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Brain - Putamen (basal ganglia)
Average nTPM: 0.2
Samples: 205

Max nTPM: 1.6
Min nTPM: 0.0
Std nTPM: 0.2
Median nTPM: 0.2
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 1.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 1.0
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 1.0
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 0.9
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 0.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 0.8
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 0.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 0.8
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 0.8
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 0.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 0.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.4
FF:10164-103B2 76 years, female 0.4
Globus pallidus
Scaled Tags Per Million: 0.3
FF:10161-103A8 76 years, female 0.7
FF:10175-103C4 60 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 7.1
FF:10037-101F1 23-56 years, mixed 7.1
Putamen
Scaled Tags Per Million: 0.8
FF:10176-103C5 60 years, female 0.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.8
Samples: 4

Max nTPM: 2.4
Min nTPM: 0.0
Sample A Female 2.4
Sample B Female 0.8
Sample C Male 0.1
Sample D Male 0.0
Putamen
nTPM: 0.4
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.1
Sample A Female 0.7
Sample B Female 0.2
Sample C Male 0.4
Sample D Male 0.1
Septum
nTPM: 18.7
Samples: 4

Max nTPM: 36.1
Min nTPM: 5.0
Sample A Female 15.0
Sample B Female 5.0
Sample C Male 36.1
Sample D Male 18.6
Ventral pallidum
nTPM: 2.2
Samples: 4

Max nTPM: 5.3
Min nTPM: 0.2
Sample A Female 1.5
Sample B Female 0.2
Sample C Male 5.3
Sample D Male 1.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 47.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.5
Samples: 4

Max nTPM: 13.9
Min nTPM: 8.5
Sample A Male 8.5
Sample B Male 10.9
Sample C Female 8.8
Sample D Female 13.9
Septum
nTPM: 47.1
Samples: 4

Max nTPM: 54.0
Min nTPM: 38.1
Sample A Male 54.0
Sample B Male 46.3
Sample C Female 38.1
Sample D Female 50.0
Ventral forebrain
nTPM: 17.5
Samples: 4

Max nTPM: 28.0
Min nTPM: 10.4
Sample A Male 10.4
Sample B Male 28.0
Sample C Female 15.9
Sample D Female 15.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.3
68666858 Antisense, RP_050201_01_B03, Mouse strain C57BL/6J (56 days, male) 2.4
71587885 Antisense, RP_050725_03_A10, Mouse strain C57BL/6J (56 days, male) 2.3
Pallidum
Expression energy: 4.8
68666858 Antisense, RP_050201_01_B03, Mouse strain C57BL/6J (56 days, male) 5.1
71587885 Antisense, RP_050725_03_A10, Mouse strain C57BL/6J (56 days, male) 4.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.