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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:40.1 nTPM
HPA:40.1 nTPM
GTEx:41.2 nTPM
FANTOM5:42.4 Scaled Tags Per Million
Pig:19.9 nTPM
Mouse:52.9 nTPM
Allen mouse:5.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA023033Antibody HPA023034
Glial cells LowLow
Neuronal cells LowMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.7
1781 Male, age 74, unknown 38.4
2289 Male, age 61, right hemisphere 37.6
1857 Female, age 85, left hemisphere 37.5
2288 Male, age 75, left hemisphere 36.8
2290 Female, age 72, unknown 36.6
2481 Female, age 94, left hemisphere 35.8
2846 Female, age 79, unknown 35.6
1854 Male, age 80, left hemisphere 35.5
Claustrum
nTPM: 40.1
2568 Male, age 61, both hemispheres 47.4
2198 Male, age 80, both hemispheres 40.8
1956 Male, age 74, unknown 40.7
2284 Female, age 91, both hemispheres 40.4
2491 Male, age 75, both hemispheres 40.1
2645 Female, age 72, unknown 40.0
2292 Female, age 85, both hemispheres 38.0
2196 Female, age 79, unknown 37.5
2392 Female, age 94, both hemispheres 36.2
Globus pallidus, externus
nTPM: 38.8
1996 Male, age 80, right hemisphere 40.7
2646 Male, age 61, right hemisphere 40.4
2772 Female, age 79, unknown 40.2
2567 Female, age 72, unknown 36.6
2395 Male, age 75, both hemispheres 36.3
Globus pallidus, internus
nTPM: 39.2
2778 Female, age 91, both hemispheres 43.0
2287 Male, age 75, right hemisphere 41.5
2111 Female, age 85, right hemisphere 41.3
2483 Female, age 94, right hemisphere 37.7
1818 Male, age 74, unknown 37.5
2037 Male, age 80, right hemisphere 37.2
2566 Female, age 72, unknown 36.2
Nucleus accumbens
nTPM: 37.5
2824 Male, age 61, right hemisphere 40.5
1806 Female, age 85, left hemisphere 40.0
1783 Male, age 74, unknown 38.8
2286 Male, age 75, left hemisphere 37.7
2698 Female, age 72, unknown 37.2
1856 Female, age 91, right hemisphere 36.8
2732 Male, age 80, right hemisphere 35.2
2391 Female, age 94, left hemisphere 34.2
Nucleus basalis of Meynert
nTPM: 36.1
2569 Male, age 61, both hemispheres 40.0
2484 Female, age 94, left hemisphere 35.3
2821 Male, age 75, both hemispheres 35.2
2393 Male, age 80, right hemisphere 33.9
Nucleus of the diagonal band
nTPM: 38.2
2029 Male, age 61, right hemisphere 42.2
2775 Male, age 80, right hemisphere 38.9
2195 Female, age 85, both hemispheres 38.7
1812 Female, age 91, both hemispheres 38.2
1979 Male, age 74, unknown 32.9
Olfactory tubercle
nTPM: 38.5
2487 Female, age 94, left hemisphere 39.8
1998 Female, age 91, both hemispheres 39.2
2856 Male, age 75, right hemisphere 38.7
1846 Male, age 80, right hemisphere 36.2
Putamen
nTPM: 36.2
2647 Male, age 75, left hemisphere 38.7
1937 Female, age 91, right hemisphere 37.5
2466 Female, age 79, unknown 37.5
1838 Male, age 80, right hemisphere 35.5
1829 Male, age 74, unknown 35.0
2482 Female, age 94, left hemisphere 34.5
2489 Female, age 72, unknown 34.5
Septal nuclei
nTPM: 37.3
1960 Male, age 74, unknown 41.2
2031 Female, age 72, unknown 40.9
2059 Female, age 85, both hemispheres 37.8
2394 Male, age 61, left hemisphere 36.7
2629 Female, age 94, right hemisphere 36.4
2009 Female, age 91, both hemispheres 35.4
2199 Male, age 80, right hemisphere 32.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 37.3
Samples: 246

Max nTPM: 68.3
Min nTPM: 20.3
Std nTPM: 7.2
Median nTPM: 36.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 68.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 60.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 59.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 58.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 55.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 53.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 51.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 50.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 50.0
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 50.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 49.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.2
Samples: 246

Max nTPM: 88.3
Min nTPM: 12.8
Std nTPM: 9.1
Median nTPM: 40.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 88.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 73.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 73.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 66.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 61.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 61.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 61.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 59.4
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 58.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 58.5
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 57.6
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Brain - Putamen (basal ganglia)
Average nTPM: 39.8
Samples: 205

Max nTPM: 74.0
Min nTPM: 22.2
Std nTPM: 7.8
Median nTPM: 38.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 74.0
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 69.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 62.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 60.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 59.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 58.5
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 57.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 55.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 54.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 54.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 53.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 31.4
FF:10164-103B2 76 years, female 31.4
Globus pallidus
Scaled Tags Per Million: 42.4
FF:10175-103C4 60 years, female 52.0
FF:10161-103A8 76 years, female 32.8
Nucleus accumbens
Scaled Tags Per Million: 34.1
FF:10037-101F1 23-56 years, mixed 34.1
Putamen
Scaled Tags Per Million: 38.6
FF:10176-103C5 60 years, female 38.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.9
Pig sample Sample description nTPM
Caudate
nTPM: 15.1
Samples: 4

Max nTPM: 16.9
Min nTPM: 12.4
Sample A Female 12.4
Sample B Female 16.5
Sample C Male 16.9
Sample D Male 14.6
Putamen
nTPM: 19.9
Samples: 4

Max nTPM: 26.0
Min nTPM: 12.8
Sample A Female 26.0
Sample B Female 12.8
Sample C Male 18.6
Sample D Male 22.2
Septum
nTPM: 15.3
Samples: 4

Max nTPM: 17.0
Min nTPM: 14.1
Sample A Female 15.7
Sample B Female 14.1
Sample C Male 17.0
Sample D Male 14.2
Ventral pallidum
nTPM: 18.6
Samples: 4

Max nTPM: 26.0
Min nTPM: 12.4
Sample A Female 12.4
Sample B Female 17.9
Sample C Male 26.0
Sample D Male 18.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 52.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 51.1
Samples: 4

Max nTPM: 52.9
Min nTPM: 48.8
Sample A Male 52.7
Sample B Male 52.9
Sample C Female 50.0
Sample D Female 48.8
Septum
nTPM: 52.9
Samples: 4

Max nTPM: 55.7
Min nTPM: 51.1
Sample A Male 51.1
Sample B Male 52.2
Sample C Female 55.7
Sample D Female 52.6
Ventral forebrain
nTPM: 50.3
Samples: 4

Max nTPM: 52.7
Min nTPM: 47.2
Sample A Male 47.2
Sample B Male 52.0
Sample C Female 49.2
Sample D Female 52.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.4
69095961 Antisense, RP_050324_02_E10, Mouse strain C57BL/6J (56 days, male) 10.9
74736360 Antisense, RP_060306_01_C02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 5.6
69095961 Antisense, RP_050324_02_E10, Mouse strain C57BL/6J (56 days, male) 11.2
74736360 Antisense, RP_060306_01_C02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.