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RNPC3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA:9.5 nTPM
GTEx:21.2 nTPM
FANTOM5:198.3 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:5.2 nTPM
Allen mouse:1.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 9.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.0
1854 Male, age 80, left hemisphere 10.6
2290 Female, age 72, unknown 9.5
1857 Female, age 85, left hemisphere 8.9
2846 Female, age 79, unknown 7.6
2289 Male, age 61, right hemisphere 7.4
2288 Male, age 75, left hemisphere 7.1
1781 Male, age 74, unknown 5.3
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 4.8
2392 Female, age 94, both hemispheres 7.0
2196 Female, age 79, unknown 6.9
2645 Female, age 72, unknown 5.9
2491 Male, age 75, both hemispheres 5.7
2292 Female, age 85, both hemispheres 5.2
2284 Female, age 91, both hemispheres 4.8
2568 Male, age 61, both hemispheres 4.3
1956 Male, age 74, unknown 3.4
2198 Male, age 80, both hemispheres 0.0
Globus pallidus, externus
nTPM: 1.7
2567 Female, age 72, unknown 8.6
1996 Male, age 80, right hemisphere 0.2
2395 Male, age 75, both hemispheres 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 2.4
2111 Female, age 85, right hemisphere 6.2
2566 Female, age 72, unknown 5.3
1818 Male, age 74, unknown 3.3
2037 Male, age 80, right hemisphere 1.7
2778 Female, age 91, both hemispheres 0.5
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
Nucleus accumbens
nTPM: 8.7
2698 Female, age 72, unknown 12.9
2824 Male, age 61, right hemisphere 12.9
1783 Male, age 74, unknown 10.7
1806 Female, age 85, left hemisphere 10.4
1856 Female, age 91, right hemisphere 8.3
2391 Female, age 94, left hemisphere 6.5
2286 Male, age 75, left hemisphere 5.7
2732 Male, age 80, right hemisphere 2.5
Nucleus basalis of Meynert
nTPM: 7.7
2393 Male, age 80, right hemisphere 14.8
2821 Male, age 75, both hemispheres 10.1
2484 Female, age 94, left hemisphere 4.0
2569 Male, age 61, both hemispheres 2.1
Nucleus of the diagonal band
nTPM: 2.2
2029 Male, age 61, right hemisphere 6.7
2195 Female, age 85, both hemispheres 3.2
1979 Male, age 74, unknown 0.9
1812 Female, age 91, both hemispheres 0.0
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 7.4
2856 Male, age 75, right hemisphere 13.4
2487 Female, age 94, left hemisphere 11.6
1998 Female, age 91, both hemispheres 4.8
1846 Male, age 80, right hemisphere 0.0
Putamen
nTPM: 9.5
1838 Male, age 80, right hemisphere 20.6
2489 Female, age 72, unknown 11.7
1937 Female, age 91, right hemisphere 9.9
1829 Male, age 74, unknown 8.7
2647 Male, age 75, left hemisphere 8.2
2482 Female, age 94, left hemisphere 7.5
2466 Female, age 79, unknown 0.0
Septal nuclei
nTPM: 1.8
2629 Female, age 94, right hemisphere 8.9
2059 Female, age 85, both hemispheres 1.2
2394 Male, age 61, left hemisphere 1.2
2009 Female, age 91, both hemispheres 1.0
1960 Male, age 74, unknown 0.0
2031 Female, age 72, unknown 0.0
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 21.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.6
Samples: 246

Max nTPM: 46.1
Min nTPM: 5.3
Std nTPM: 7.3
Median nTPM: 18.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 46.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 44.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 41.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 39.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 34.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 34.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 34.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 33.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 33.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 33.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 33.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.2
Samples: 246

Max nTPM: 71.0
Min nTPM: 4.6
Std nTPM: 10.6
Median nTPM: 20.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 71.0
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 49.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 49.0
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 46.7
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 45.6
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 45.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 45.0
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 44.1
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 41.4
GTEX-13FLW-0011-R6b-SM-5L3EN 50-59 years, male 40.7
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 40.3
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Brain - Putamen (basal ganglia)
Average nTPM: 15.2
Samples: 205

Max nTPM: 68.9
Min nTPM: 4.6
Std nTPM: 7.1
Median nTPM: 13.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 68.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 40.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 30.8
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 29.9
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 29.6
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 28.8
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 28.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 27.6
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 27.4
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 26.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 26.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 198.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 198.3
FF:10164-103B2 76 years, female 198.3
Globus pallidus
Scaled Tags Per Million: 109.9
FF:10175-103C4 60 years, female 111.3
FF:10161-103A8 76 years, female 108.5
Nucleus accumbens
Scaled Tags Per Million: 100.6
FF:10037-101F1 23-56 years, mixed 100.6
Putamen
Scaled Tags Per Million: 168.9
FF:10176-103C5 60 years, female 168.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Caudate
nTPM: 3.8
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.2
Sample A Female 4.2
Sample B Female 3.2
Sample C Male 3.8
Sample D Male 4.0
Putamen
nTPM: 4.4
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.8
Sample A Female 5.1
Sample B Female 3.9
Sample C Male 3.8
Sample D Male 4.6
Septum
nTPM: 4.7
Samples: 4

Max nTPM: 4.9
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 4.7
Sample C Male 4.7
Sample D Male 4.9
Ventral pallidum
nTPM: 5.1
Samples: 4

Max nTPM: 7.4
Min nTPM: 4.0
Sample A Female 7.4
Sample B Female 4.0
Sample C Male 4.2
Sample D Male 4.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.3
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.7
Sample A Male 5.1
Sample B Male 4.7
Sample C Female 5.7
Sample D Female 5.6
Septum
nTPM: 4.6
Samples: 4

Max nTPM: 5.1
Min nTPM: 4.3
Sample A Male 4.3
Sample B Male 5.1
Sample C Female 4.7
Sample D Female 4.4
Ventral forebrain
nTPM: 4.9
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.8
Sample A Male 5.3
Sample B Male 3.8
Sample C Female 5.2
Sample D Female 5.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
583856 Antisense, RP_040831_01_B07, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 1.3
583856 Antisense, RP_040831_01_B07, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.