ABOUTMENU
HELP
NEWS
RASA3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.9 nTPM
HPA:8.9 nTPM
GTEx:14.6 nTPM
FANTOM5:31.5 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:31.1 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.6
2586 Male, age 75, left hemisphere 10.3
2828 Female, age 72, unknown 8.2
1830 Male, age 51, unknown 7.9
1833 Male, age 53, unknown 7.5
1870 Female, age 42, unknown 7.5
1827 Male, age 72, unknown 7.2
2666 Male, age 74, left hemisphere 7.2
2411 Female, age 72, unknown 7.1
2219 Male, age 76, both hemispheres 6.4
2019 Male, age 18, unknown 6.2
Dorsal raphe nucleus
nTPM: 7.3
2750 Male, age 76, both hemispheres 8.3
2016 Female, age 72, unknown 7.9
2298 Female, age 72, unknown 7.2
2047 Male, age 72, unknown 6.6
1828 Male, age 53, unknown 6.5
Inferior colliculus
nTPM: 6.4
2849 Male, age 72, unknown 7.4
1848 Female, age 42, unknown 6.4
1890 Male, age 53, unknown 6.2
2097 Female, age 72, unknown 5.6
Median raphe nucleus
nTPM: 8.9
2220 Male, age 76, midline 8.9
Pedunculopontine tegmental nucleus
nTPM: 7.1
2338 Male, age 61, both hemispheres 7.3
2334 Male, age 80, both hemispheres 7.2
1921 Female, age 85, both hemispheres 6.9
Periaquaductal grey, anterior
nTPM: 7.9
1947 Male, age 18, unknown 8.7
1795 Male, age 51, unknown 8.0
2502 Female, age 75, unknown 7.1
Periaquaductal grey, dorsal
nTPM: 7.7
2850 Male, age 76, both hemispheres 8.3
1840 Male, age 53, unknown 7.9
1831 Male, age 72, unknown 7.5
2464 Female, age 72, unknown 7.0
Periaquaductal grey, lateral
nTPM: 8.7
2272 Male, age 74, both hemispheres 9.0
2053 Male, age 18, unknown 8.9
2140 Male, age 76, both hemispheres 8.1
Pretectal area
nTPM: 7.9
2407 Male, age 75, both hemispheres 10.1
2316 Male, age 76, right hemisphere 9.1
2273 Male, age 74, both hemispheres 8.7
2825 Male, age 18, unknown 8.6
1815 Male, age 53, unknown 8.4
2667 Female, age 75, unknown 7.6
2224 Female, age 72, unknown 7.2
1817 Female, age 42, unknown 6.9
1944 Female, age 72, unknown 6.9
2007 Male, age 72, unknown 6.6
1816 Male, age 51, unknown 6.2
Red nucleus
nTPM: 7.6
2823 Male, age 76, right hemisphere 9.7
2584 Male, age 75, left hemisphere 9.5
2725 Female, age 75, unknown 8.4
1865 Male, age 51, unknown 8.2
2227 Male, age 72, unknown 7.4
2769 Male, age 72, unknown 7.4
1904 Male, age 53, unknown 7.3
2503 Female, age 72, unknown 7.1
2785 Male, age 18, unknown 6.9
2588 Male, age 74, left hemisphere 6.7
1954 Female, age 42, unknown 6.3
1821 Female, age 72, unknown 5.9
Substantia nigra
nTPM: 7.4
2583 Male, age 75, right hemisphere 9.0
2699 Male, age 18, unknown 9.0
2590 Female, age 75, unknown 8.2
2665 Male, age 74, both hemispheres 8.1
1851 Male, age 51, unknown 7.6
2241 Male, age 72, unknown 7.0
1941 Male, age 53, unknown 6.7
2409 Female, age 72, unknown 6.4
1889 Female, age 72, unknown 6.2
1916 Female, age 42, unknown 5.8
Superior colliculus
nTPM: 8.2
1913 Female, age 42, unknown 10.5
1995 Male, age 72, unknown 10.3
2664 Male, age 75, both hemispheres 8.6
1796 Male, age 53, unknown 8.0
2587 Male, age 74, left hemisphere 7.9
1839 Male, age 51, unknown 7.8
1895 Male, age 76, right hemisphere 7.5
2668 Female, age 75, unknown 7.3
2087 Female, age 72, unknown 6.8
2261 Male, age 18, unknown 6.8
Ventral tegmental area
nTPM: 7.6
2021 Male, age 53, unknown 8.7
1942 Male, age 51, unknown 8.3
2218 Male, age 76, both hemispheres 7.5
2223 Female, age 72, unknown 7.4
1915 Female, age 42, unknown 7.0
2410 Female, age 72, unknown 6.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.6
Samples: 139

Max nTPM: 28.8
Min nTPM: 7.6
Std nTPM: 4.3
Median nTPM: 13.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 28.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 25.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 25.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 25.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 24.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 23.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 23.1
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 22.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 22.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 22.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 22.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.5
FF:10158-103A5 76 years, female 31.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.0
Pig sample Sample description nTPM
Midbrain
nTPM: 7.8
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 7.9
Sample C Male 8.5
Sample D Male 7.4
Periaqueductal gray
nTPM: 7.4
Samples: 3

Max nTPM: 8.0
Min nTPM: 6.3
Sample B Female 7.8
Sample C Male 8.0
Sample D Male 6.3
Substantia nigra
nTPM: 8.0
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.8
Sample A Female 8.3
Sample B Female 9.4
Sample C Male 7.5
Sample D Male 6.8
Superior colliculi
nTPM: 7.7
Samples: 4

Max nTPM: 8.2
Min nTPM: 7.3
Sample A Female 8.2
Sample B Female 7.8
Sample C Male 7.3
Sample D Male 7.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 31.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 32.0
Min nTPM: 30.0
Sample A Male 31.5
Sample B Male 32.0
Sample C Female 30.0
Sample D Female 30.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
69817970 Antisense, RP_050510_04_B05, Mouse strain C57BL/6J (56 days, male) 1.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.