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SMIM29
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:136.0 nTPM
HPA:136.0 nTPM
GTEx:103.3 nTPM
FANTOM5:45.5 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 136.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 127.6
2586 Male, age 75, left hemisphere 140.0
2666 Male, age 74, left hemisphere 134.8
2828 Female, age 72, unknown 131.4
1827 Male, age 72, unknown 128.1
2411 Female, age 72, unknown 126.7
2019 Male, age 18, unknown 124.6
1833 Male, age 53, unknown 124.4
2219 Male, age 76, both hemispheres 123.2
1870 Female, age 42, unknown 123.0
1830 Male, age 51, unknown 119.9
Dorsal raphe nucleus
nTPM: 127.6
2047 Male, age 72, unknown 135.2
1828 Male, age 53, unknown 133.3
2750 Male, age 76, both hemispheres 128.2
2298 Female, age 72, unknown 123.2
2016 Female, age 72, unknown 118.2
Inferior colliculus
nTPM: 115.4
1848 Female, age 42, unknown 118.7
2849 Male, age 72, unknown 116.4
1890 Male, age 53, unknown 114.8
2097 Female, age 72, unknown 111.8
Median raphe nucleus
nTPM: 135.4
2220 Male, age 76, midline 135.4
Pedunculopontine tegmental nucleus
nTPM: 127.0
2334 Male, age 80, both hemispheres 133.5
1921 Female, age 85, both hemispheres 124.6
2338 Male, age 61, both hemispheres 122.9
Periaquaductal grey, anterior
nTPM: 128.1
1795 Male, age 51, unknown 131.7
1947 Male, age 18, unknown 128.7
2502 Female, age 75, unknown 123.9
Periaquaductal grey, dorsal
nTPM: 118.4
2850 Male, age 76, both hemispheres 125.0
1840 Male, age 53, unknown 116.8
2464 Female, age 72, unknown 116.8
1831 Male, age 72, unknown 115.1
Periaquaductal grey, lateral
nTPM: 117.2
2140 Male, age 76, both hemispheres 118.1
2272 Male, age 74, both hemispheres 116.9
2053 Male, age 18, unknown 116.5
Pretectal area
nTPM: 125.0
1817 Female, age 42, unknown 134.1
1816 Male, age 51, unknown 132.2
2007 Male, age 72, unknown 131.0
1944 Female, age 72, unknown 127.5
2667 Female, age 75, unknown 127.5
1815 Male, age 53, unknown 126.1
2825 Male, age 18, unknown 123.9
2224 Female, age 72, unknown 121.4
2316 Male, age 76, right hemisphere 121.3
2407 Male, age 75, both hemispheres 117.4
2273 Male, age 74, both hemispheres 112.8
Red nucleus
nTPM: 130.3
2725 Female, age 75, unknown 139.8
2588 Male, age 74, left hemisphere 133.6
1821 Female, age 72, unknown 132.9
2769 Male, age 72, unknown 132.1
1954 Female, age 42, unknown 131.3
2584 Male, age 75, left hemisphere 130.5
2823 Male, age 76, right hemisphere 128.9
1904 Male, age 53, unknown 128.5
2227 Male, age 72, unknown 127.8
1865 Male, age 51, unknown 126.7
2503 Female, age 72, unknown 126.7
2785 Male, age 18, unknown 124.7
Substantia nigra
nTPM: 136.0
1916 Female, age 42, unknown 157.0
2665 Male, age 74, both hemispheres 143.0
1851 Male, age 51, unknown 141.5
1941 Male, age 53, unknown 140.1
2699 Male, age 18, unknown 139.1
2583 Male, age 75, right hemisphere 133.3
1889 Female, age 72, unknown 130.9
2241 Male, age 72, unknown 128.1
2409 Female, age 72, unknown 127.2
2590 Female, age 75, unknown 119.8
Superior colliculus
nTPM: 122.1
2668 Female, age 75, unknown 129.7
2261 Male, age 18, unknown 127.0
2664 Male, age 75, both hemispheres 125.9
1796 Male, age 53, unknown 124.8
2087 Female, age 72, unknown 123.9
2587 Male, age 74, left hemisphere 120.2
1839 Male, age 51, unknown 119.3
1995 Male, age 72, unknown 117.5
1895 Male, age 76, right hemisphere 116.7
1913 Female, age 42, unknown 115.8
Ventral tegmental area
nTPM: 134.0
2410 Female, age 72, unknown 142.4
1915 Female, age 42, unknown 141.4
2218 Male, age 76, both hemispheres 134.5
1942 Male, age 51, unknown 131.5
2223 Female, age 72, unknown 128.9
2021 Male, age 53, unknown 125.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.3
Samples: 139

Max nTPM: 210.5
Min nTPM: 44.4
Std nTPM: 31.6
Median nTPM: 100.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 210.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 192.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 180.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 163.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 163.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 160.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 159.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 158.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 156.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 155.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 154.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.5
FF:10158-103A5 76 years, female 45.5

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