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MPPED1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.2 nTPM
HPA:30.2 nTPM
GTEx:3.6 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:66.2 nTPM
Allen mouse:2.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 4.3
2645 Female, age 72, unknown 9.5
2568 Male, age 61, both hemispheres 9.2
1956 Male, age 74, unknown 8.2
2198 Male, age 80, both hemispheres 5.7
2491 Male, age 75, both hemispheres 4.7
2284 Female, age 91, both hemispheres 1.2
2196 Female, age 79, unknown 0.0
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 25.4
2775 Male, age 80, right hemisphere 43.8
2029 Male, age 61, right hemisphere 36.2
2195 Female, age 85, both hemispheres 29.1
1812 Female, age 91, both hemispheres 17.7
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 30.2
2487 Female, age 94, left hemisphere 36.0
1998 Female, age 91, both hemispheres 33.0
1846 Male, age 80, right hemisphere 26.5
2856 Male, age 75, right hemisphere 25.4
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 17.7
1960 Male, age 74, unknown 42.5
2031 Female, age 72, unknown 30.2
2059 Female, age 85, both hemispheres 21.2
2629 Female, age 94, right hemisphere 18.2
2009 Female, age 91, both hemispheres 11.9
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.2
Samples: 246

Max nTPM: 85.9
Min nTPM: 0.1
Std nTPM: 5.7
Median nTPM: 1.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 85.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 31.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 8.0
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 5.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 5.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 4.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 4.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 4.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 3.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 3.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 3.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.6
Samples: 246

Max nTPM: 24.1
Min nTPM: 0.6
Std nTPM: 2.5
Median nTPM: 3.1
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 24.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 20.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 14.0
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 11.7
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 9.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 8.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 8.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 8.1
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 8.1
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 7.8
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 7.4
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Brain - Putamen (basal ganglia)
Average nTPM: 2.3
Samples: 205

Max nTPM: 16.2
Min nTPM: 0.1
Std nTPM: 1.7
Median nTPM: 2.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 16.2
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 14.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 8.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 4.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 4.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 4.7
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 4.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 4.3
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 4.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 4.1
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 4.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.6
FF:10164-103B2 76 years, female 4.6
Globus pallidus
Scaled Tags Per Million: 1.6
FF:10161-103A8 76 years, female 1.6
FF:10175-103C4 60 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 32.7
FF:10037-101F1 23-56 years, mixed 32.7
Putamen
Scaled Tags Per Million: 4.2
FF:10176-103C5 60 years, female 4.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.5
Pig sample Sample description nTPM
Caudate
nTPM: 4.4
Samples: 4

Max nTPM: 7.2
Min nTPM: 2.7
Sample A Female 7.2
Sample B Female 3.7
Sample C Male 3.8
Sample D Male 2.7
Putamen
nTPM: 3.8
Samples: 4

Max nTPM: 6.6
Min nTPM: 2.2
Sample A Female 6.6
Sample B Female 2.2
Sample C Male 2.7
Sample D Male 3.8
Septum
nTPM: 7.5
Samples: 4

Max nTPM: 10.7
Min nTPM: 5.2
Sample A Female 7.6
Sample B Female 5.2
Sample C Male 6.5
Sample D Male 10.7
Ventral pallidum
nTPM: 5.6
Samples: 4

Max nTPM: 9.6
Min nTPM: 3.5
Sample A Female 4.2
Sample B Female 3.5
Sample C Male 9.6
Sample D Male 4.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 66.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.3
Samples: 4

Max nTPM: 79.1
Min nTPM: 31.8
Sample A Male 31.8
Sample B Male 37.2
Sample C Female 65.1
Sample D Female 79.1
Septum
nTPM: 45.4
Samples: 4

Max nTPM: 70.1
Min nTPM: 23.7
Sample A Male 70.1
Sample B Male 43.0
Sample C Female 44.7
Sample D Female 23.7
Ventral forebrain
nTPM: 66.2
Samples: 4

Max nTPM: 82.9
Min nTPM: 42.5
Sample A Male 77.2
Sample B Male 42.5
Sample C Female 62.3
Sample D Female 82.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.3
68861785 Antisense, RP_050301_01_A01, Mouse strain C57BL/6J (56 days, male) 2.3
70231303 Antisense, RP_050301_01_A01, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 0.9
70231303 Antisense, RP_050301_01_A01, Mouse strain C57BL/6J (56 days, male) 0.9
68861785 Antisense, RP_050301_01_A01, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.