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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:30.0 nTPM
HPA:30.0 nTPM
GTEx:94.0 nTPM
FANTOM5:517.2 Scaled Tags Per Million
Pig:162.7 nTPM
Mouse:154.0 nTPM
Allen mouse:18.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA069524Antibody HPA069570Antibody CAB000151Antibody CAB072344
Glial cells Not detectedNot detectedNot detectedHigh
Neuronal cells Not detectedLowMediumMedium









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.0
Sample id Sample description nTPM
Hippocampus
nTPM: 12.5
2621 Female, age 67, right hemisphere 28.8
1855 Male, age 76, left hemisphere 18.1
1898 Male, age 80, left hemisphere 17.6
2148 Female, age 91, left hemisphere 9.2
1911 Female, age 85, right hemisphere 1.4
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 13.2
1927 Female, age 91, both hemispheres 26.6
2530 Female, age 94, left hemisphere 24.3
2010 Male, age 76, both hemispheres 11.4
2531 Female, age 67, both hemispheres 8.7
2246 Female, age 85, both hemispheres 8.2
2528 Male, age 74, both hemispheres 0.0
Entorhinal gyrus
nTPM: 15.6
2764 Male, age 80, right hemisphere 27.8
2613 Female, age 94, left hemisphere 23.3
1938 Female, age 85, left hemisphere 18.7
1787 Male, age 76, left hemisphere 15.3
2686 Male, age 75, right hemisphere 5.2
2117 Female, age 91, right hemisphere 3.2
Hippocampus, CA1
nTPM: 17.1
2749 Male, age 80, left hemisphere 33.6
1873 Female, age 85, both hemispheres 26.1
2527 Male, age 74, both hemispheres 15.9
2082 Female, age 91, right hemisphere 9.8
2045 Male, age 76, both hemispheres 0.0
Hippocampus, CA2
nTPM: 12.5
1892 Male, age 76, both hemispheres 21.4
1963 Male, age 80, left hemisphere 20.9
2437 Female, age 94, left hemisphere 18.1
1940 Female, age 85, left hemisphere 9.9
2113 Female, age 91, right hemisphere 4.6
2249 Male, age 74, both hemispheres 0.0
Hippocampus, CA3
nTPM: 11.5
2620 Female, age 94, left hemisphere 39.3
2861 Female, age 67, both hemispheres 19.3
2137 Male, age 80, left hemisphere 6.7
1891 Female, age 85, both hemispheres 3.7
1867 Male, age 76, both hemispheres 0.0
2436 Male, age 74, both hemispheres 0.0
Parahippocampal cortex
nTPM: 21.7
2622 Female, age 67, right hemisphere 35.4
2245 Female, age 91, both hemispheres 31.8
1850 Male, age 80, both hemispheres 30.5
1990 Female, age 91, right hemisphere 24.5
2532 Female, age 72, left hemisphere 23.2
2250 Female, age 67, right hemisphere 21.3
1933 Female, age 85, both hemispheres 18.6
2693 Female, age 94, both hemispheres 15.0
2018 Male, age 76, both hemispheres 9.9
2692 Male, age 74, both hemispheres 6.6
Perirhinal gyrus
nTPM: 30.0
1847 Female, age 91, left hemisphere 50.0
2521 Female, age 94, right hemisphere 32.8
1794 Male, age 80, right hemisphere 27.6
1841 Female, age 85, right hemisphere 27.2
2848 Male, age 76, right hemisphere 12.6
Subiculum
nTPM: 6.3
1977 Female, age 85, both hemispheres 13.1
2438 Female, age 94, left hemisphere 12.2
1901 Male, age 80, both hemispheres 8.4
2619 Male, age 74, both hemispheres 3.9
2042 Male, age 76, both hemispheres 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 94.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 94.0
Samples: 197

Max nTPM: 177.8
Min nTPM: 15.1
Std nTPM: 30.1
Median nTPM: 90.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 177.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 177.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 162.3
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 160.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 157.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 156.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 155.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 145.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 145.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 145.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 145.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 517.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 517.2
FF:10169-103B7 60 years, female 563.9
FF:10153-102I9 76 years, female 470.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 162.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 149.7
Samples: 4

Max nTPM: 180.9
Min nTPM: 117.9
Sample A Female 180.9
Sample B Female 175.0
Sample C Male 117.9
Sample D Male 125.1
Entorhinal cortex
nTPM: 162.7
Samples: 4

Max nTPM: 185.4
Min nTPM: 142.8
Sample A Female 169.4
Sample B Female 142.8
Sample C Male 185.4
Sample D Male 153.1
Subiculum
nTPM: 151.5
Samples: 4

Max nTPM: 192.2
Min nTPM: 130.1
Sample A Female 192.2
Sample B Female 138.9
Sample C Male 144.7
Sample D Male 130.1
Ventral hippocampus
nTPM: 144.0
Samples: 4

Max nTPM: 183.4
Min nTPM: 108.1
Sample A Female 127.5
Sample B Female 108.1
Sample C Male 183.4
Sample D Male 156.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 154.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 154.0
Samples: 4

Max nTPM: 158.3
Min nTPM: 144.7
Sample A Male 155.8
Sample B Male 157.3
Sample C Female 144.7
Sample D Female 158.3
Hippocampal formation
nTPM: 150.9
Samples: 4

Max nTPM: 156.7
Min nTPM: 139.2
Sample A Male 151.3
Sample B Male 156.4
Sample C Female 156.7
Sample D Female 139.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 18.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 18.9
79556696 Antisense, RP_071204_01_D02, Mouse strain C57BL/6J (56 days, male) 18.9
80525654 Antisense, RP_071204_01_D02, Mouse strain C57BL/6J (56 days, male) 10.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.