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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.4 nTPM
HPA:11.4 nTPM
GTEx:70.2 nTPM
FANTOM5:380.8 Scaled Tags Per Million
Pig:111.2 nTPM
Mouse:164.4 nTPM
Allen mouse:16.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.3
2219 Male, age 76, both hemispheres 20.2
2666 Male, age 74, left hemisphere 11.4
1870 Female, age 42, unknown 4.1
1827 Male, age 72, unknown 4.0
2828 Female, age 72, unknown 3.4
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
2019 Male, age 18, unknown 0.0
2411 Female, age 72, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
Dorsal raphe nucleus
nTPM: 5.9
2298 Female, age 72, unknown 12.3
2047 Male, age 72, unknown 9.1
2750 Male, age 76, both hemispheres 8.3
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 2.2
2849 Male, age 72, unknown 6.1
2097 Female, age 72, unknown 1.4
1848 Female, age 42, unknown 1.2
1890 Male, age 53, unknown 0.0
Median raphe nucleus
nTPM: 11.4
2220 Male, age 76, midline 11.4
Pedunculopontine tegmental nucleus
nTPM: 5.9
1921 Female, age 85, both hemispheres 9.8
2334 Male, age 80, both hemispheres 7.9
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 6.3
1947 Male, age 18, unknown 8.9
1795 Male, age 51, unknown 6.7
2502 Female, age 75, unknown 3.3
Periaquaductal grey, dorsal
nTPM: 0.6
1840 Male, age 53, unknown 2.4
1831 Male, age 72, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 8.9
1944 Female, age 72, unknown 24.2
1816 Male, age 51, unknown 18.6
2224 Female, age 72, unknown 15.8
2007 Male, age 72, unknown 12.8
1815 Male, age 53, unknown 10.3
1817 Female, age 42, unknown 9.6
2825 Male, age 18, unknown 3.9
2667 Female, age 75, unknown 3.3
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
Red nucleus
nTPM: 0.8
2725 Female, age 75, unknown 7.0
2588 Male, age 74, left hemisphere 2.9
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 8.4
1916 Female, age 42, unknown 18.3
1941 Male, age 53, unknown 17.2
1889 Female, age 72, unknown 17.0
1851 Male, age 51, unknown 12.4
2409 Female, age 72, unknown 10.7
2665 Male, age 74, both hemispheres 5.4
2241 Male, age 72, unknown 3.3
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 4.1
2087 Female, age 72, unknown 17.1
2261 Male, age 18, unknown 10.0
1796 Male, age 53, unknown 6.8
1895 Male, age 76, right hemisphere 5.5
2668 Female, age 75, unknown 1.6
1839 Male, age 51, unknown 0.6
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 3.4
1915 Female, age 42, unknown 8.9
2218 Male, age 76, both hemispheres 6.6
1942 Male, age 51, unknown 2.8
2021 Male, age 53, unknown 2.1
2223 Female, age 72, unknown 0.0
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.2
Samples: 139

Max nTPM: 141.7
Min nTPM: 28.5
Std nTPM: 20.0
Median nTPM: 66.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 141.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 123.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 123.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 113.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 111.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 111.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 108.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 108.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 106.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 105.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 104.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 380.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 380.8
FF:10158-103A5 76 years, female 380.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 111.2
Pig sample Sample description nTPM
Midbrain
nTPM: 111.2
Samples: 4

Max nTPM: 155.5
Min nTPM: 68.2
Sample A Female 68.2
Sample B Female 102.1
Sample C Male 155.5
Sample D Male 119.1
Periaqueductal gray
nTPM: 92.5
Samples: 3

Max nTPM: 108.9
Min nTPM: 75.6
Sample B Female 93.1
Sample C Male 108.9
Sample D Male 75.6
Substantia nigra
nTPM: 106.7
Samples: 4

Max nTPM: 141.0
Min nTPM: 76.4
Sample A Female 130.3
Sample B Female 76.4
Sample C Male 141.0
Sample D Male 78.9
Superior colliculi
nTPM: 99.2
Samples: 4

Max nTPM: 117.2
Min nTPM: 56.1
Sample A Female 111.4
Sample B Female 56.1
Sample C Male 117.2
Sample D Male 112.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 164.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 164.4
Samples: 4

Max nTPM: 169.1
Min nTPM: 159.9
Sample A Male 159.9
Sample B Male 162.8
Sample C Female 165.7
Sample D Female 169.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.8
79556696 Antisense, RP_071204_01_D02, Mouse strain C57BL/6J (56 days, male) 16.8
80525654 Antisense, RP_071204_01_D02, Mouse strain C57BL/6J (56 days, male) 10.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.