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TCEA1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.6 nTPM
HPA:44.6 nTPM
GTEx:47.3 nTPM
FANTOM5:47.5 Scaled Tags Per Million
Pig:100.1 nTPM
Mouse:96.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.7
1870 Female, age 42, unknown 45.0
2828 Female, age 72, unknown 44.4
1830 Male, age 51, unknown 43.3
1833 Male, age 53, unknown 42.8
2019 Male, age 18, unknown 41.9
1827 Male, age 72, unknown 41.2
2666 Male, age 74, left hemisphere 41.2
2586 Male, age 75, left hemisphere 40.6
2411 Female, age 72, unknown 40.0
2219 Male, age 76, both hemispheres 36.9
Dorsal raphe nucleus
nTPM: 42.2
2016 Female, age 72, unknown 45.3
1828 Male, age 53, unknown 43.5
2298 Female, age 72, unknown 41.5
2750 Male, age 76, both hemispheres 41.1
2047 Male, age 72, unknown 39.4
Inferior colliculus
nTPM: 42.6
2097 Female, age 72, unknown 43.6
1890 Male, age 53, unknown 43.5
2849 Male, age 72, unknown 41.7
1848 Female, age 42, unknown 41.6
Median raphe nucleus
nTPM: 42.6
2220 Male, age 76, midline 42.6
Pedunculopontine tegmental nucleus
nTPM: 41.5
1921 Female, age 85, both hemispheres 42.2
2334 Male, age 80, both hemispheres 41.8
2338 Male, age 61, both hemispheres 40.4
Periaquaductal grey, anterior
nTPM: 39.8
1947 Male, age 18, unknown 40.8
1795 Male, age 51, unknown 39.5
2502 Female, age 75, unknown 39.0
Periaquaductal grey, dorsal
nTPM: 44.6
2850 Male, age 76, both hemispheres 49.6
1831 Male, age 72, unknown 44.9
1840 Male, age 53, unknown 42.3
2464 Female, age 72, unknown 41.7
Periaquaductal grey, lateral
nTPM: 44.3
2140 Male, age 76, both hemispheres 48.1
2053 Male, age 18, unknown 45.8
2272 Male, age 74, both hemispheres 38.8
Pretectal area
nTPM: 42.3
2316 Male, age 76, right hemisphere 45.3
2667 Female, age 75, unknown 44.8
2273 Male, age 74, both hemispheres 44.2
1944 Female, age 72, unknown 43.9
1817 Female, age 42, unknown 43.4
1815 Male, age 53, unknown 42.4
2224 Female, age 72, unknown 41.8
2825 Male, age 18, unknown 40.8
2407 Male, age 75, both hemispheres 40.2
1816 Male, age 51, unknown 40.0
2007 Male, age 72, unknown 38.1
Red nucleus
nTPM: 44.6
2725 Female, age 75, unknown 47.4
2503 Female, age 72, unknown 47.1
2769 Male, age 72, unknown 46.7
1954 Female, age 42, unknown 46.4
1904 Male, age 53, unknown 46.3
1865 Male, age 51, unknown 46.2
1821 Female, age 72, unknown 45.8
2227 Male, age 72, unknown 45.5
2823 Male, age 76, right hemisphere 44.6
2588 Male, age 74, left hemisphere 40.7
2584 Male, age 75, left hemisphere 39.6
2785 Male, age 18, unknown 39.2
Substantia nigra
nTPM: 43.5
2409 Female, age 72, unknown 47.7
2699 Male, age 18, unknown 47.6
2241 Male, age 72, unknown 45.3
1851 Male, age 51, unknown 44.5
1916 Female, age 42, unknown 43.0
1889 Female, age 72, unknown 42.4
2583 Male, age 75, right hemisphere 42.2
2665 Male, age 74, both hemispheres 41.9
2590 Female, age 75, unknown 40.4
1941 Male, age 53, unknown 40.0
Superior colliculus
nTPM: 42.6
1995 Male, age 72, unknown 46.4
1913 Female, age 42, unknown 45.6
2587 Male, age 74, left hemisphere 42.8
2261 Male, age 18, unknown 42.5
2087 Female, age 72, unknown 42.2
1839 Male, age 51, unknown 42.0
1796 Male, age 53, unknown 41.9
1895 Male, age 76, right hemisphere 41.6
2668 Female, age 75, unknown 41.5
2664 Male, age 75, both hemispheres 39.9
Ventral tegmental area
nTPM: 42.1
1915 Female, age 42, unknown 43.7
2021 Male, age 53, unknown 42.9
2223 Female, age 72, unknown 42.8
2218 Male, age 76, both hemispheres 41.4
1942 Male, age 51, unknown 41.0
2410 Female, age 72, unknown 40.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.3
Samples: 139

Max nTPM: 94.4
Min nTPM: 24.3
Std nTPM: 11.8
Median nTPM: 45.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 94.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 81.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 75.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 72.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 72.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 70.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 67.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 67.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 67.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 66.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 66.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.5
FF:10158-103A5 76 years, female 47.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 100.1
Pig sample Sample description nTPM
Midbrain
nTPM: 100.1
Samples: 4

Max nTPM: 141.1
Min nTPM: 78.2
Sample A Female 141.1
Sample B Female 100.3
Sample C Male 80.8
Sample D Male 78.2
Periaqueductal gray
nTPM: 82.1
Samples: 3

Max nTPM: 86.2
Min nTPM: 78.1
Sample B Female 86.2
Sample C Male 78.1
Sample D Male 82.1
Substantia nigra
nTPM: 86.4
Samples: 4

Max nTPM: 100.4
Min nTPM: 70.7
Sample A Female 100.4
Sample B Female 79.6
Sample C Male 70.7
Sample D Male 94.7
Superior colliculi
nTPM: 93.6
Samples: 4

Max nTPM: 97.3
Min nTPM: 87.9
Sample A Female 93.4
Sample B Female 87.9
Sample C Male 95.9
Sample D Male 97.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.1
Samples: 4

Max nTPM: 97.5
Min nTPM: 94.7
Sample A Male 97.5
Sample B Male 94.7
Sample C Female 97.3
Sample D Female 94.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
227534 Antisense, RP_040526_02_A12, Mouse strain C57BL/6J (56 days, male) 0.6
68203475 Antisense, RP_041208_01_B07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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