ABOUTMENU
HELP
NEWS
MCRS1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:29.9 nTPM
HPA:29.9 nTPM
GTEx:27.9 nTPM
FANTOM5:35.5 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:70.7 nTPM
Allen mouse:1.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039057
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 26.5
2481 Female, age 94, left hemisphere 29.2
2289 Male, age 61, right hemisphere 28.5
2288 Male, age 75, left hemisphere 27.0
1854 Male, age 80, left hemisphere 26.6
2290 Female, age 72, unknown 26.5
1781 Male, age 74, unknown 25.5
2846 Female, age 79, unknown 24.5
1857 Female, age 85, left hemisphere 24.2
Claustrum
nTPM: 29.1
2491 Male, age 75, both hemispheres 32.9
2645 Female, age 72, unknown 30.6
2284 Female, age 91, both hemispheres 30.0
2292 Female, age 85, both hemispheres 29.6
2568 Male, age 61, both hemispheres 28.8
2198 Male, age 80, both hemispheres 28.2
2392 Female, age 94, both hemispheres 27.8
2196 Female, age 79, unknown 27.2
1956 Male, age 74, unknown 26.8
Globus pallidus, externus
nTPM: 29.9
2772 Female, age 79, unknown 31.0
1996 Male, age 80, right hemisphere 30.3
2395 Male, age 75, both hemispheres 30.1
2567 Female, age 72, unknown 29.3
2646 Male, age 61, right hemisphere 28.7
Globus pallidus, internus
nTPM: 29.3
2778 Female, age 91, both hemispheres 31.2
2287 Male, age 75, right hemisphere 31.0
2483 Female, age 94, right hemisphere 29.8
2111 Female, age 85, right hemisphere 28.8
2037 Male, age 80, right hemisphere 28.5
2566 Female, age 72, unknown 28.3
1818 Male, age 74, unknown 27.2
Nucleus accumbens
nTPM: 26.1
1783 Male, age 74, unknown 27.9
2732 Male, age 80, right hemisphere 27.0
1856 Female, age 91, right hemisphere 26.9
1806 Female, age 85, left hemisphere 26.7
2286 Male, age 75, left hemisphere 26.4
2391 Female, age 94, left hemisphere 26.0
2698 Female, age 72, unknown 24.6
2824 Male, age 61, right hemisphere 23.4
Nucleus basalis of Meynert
nTPM: 27.3
2569 Male, age 61, both hemispheres 29.8
2484 Female, age 94, left hemisphere 27.0
2393 Male, age 80, right hemisphere 26.7
2821 Male, age 75, both hemispheres 25.6
Nucleus of the diagonal band
nTPM: 28.3
1812 Female, age 91, both hemispheres 30.0
2029 Male, age 61, right hemisphere 29.1
2195 Female, age 85, both hemispheres 29.1
2775 Male, age 80, right hemisphere 28.9
1979 Male, age 74, unknown 24.3
Olfactory tubercle
nTPM: 27.8
1998 Female, age 91, both hemispheres 28.7
2487 Female, age 94, left hemisphere 28.2
1846 Male, age 80, right hemisphere 28.1
2856 Male, age 75, right hemisphere 26.1
Putamen
nTPM: 26.9
2466 Female, age 79, unknown 29.1
2647 Male, age 75, left hemisphere 28.9
2489 Female, age 72, unknown 27.7
2482 Female, age 94, left hemisphere 27.2
1937 Female, age 91, right hemisphere 26.1
1838 Male, age 80, right hemisphere 25.3
1829 Male, age 74, unknown 23.7
Septal nuclei
nTPM: 27.9
2031 Female, age 72, unknown 30.5
1960 Male, age 74, unknown 29.9
2009 Female, age 91, both hemispheres 29.5
2059 Female, age 85, both hemispheres 28.8
2199 Male, age 80, right hemisphere 26.7
2394 Male, age 61, left hemisphere 26.6
2629 Female, age 94, right hemisphere 23.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 27.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.7
Samples: 246

Max nTPM: 47.1
Min nTPM: 12.4
Std nTPM: 5.9
Median nTPM: 26.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 47.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 46.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 40.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 39.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 39.4
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 39.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 39.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 38.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 37.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 37.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 37.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.9
Samples: 246

Max nTPM: 50.0
Min nTPM: 12.4
Std nTPM: 6.1
Median nTPM: 25.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 50.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 48.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 45.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 43.8
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 42.9
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 42.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 41.0
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 41.0
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 37.6
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 37.2
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 37.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 27.9
Samples: 205

Max nTPM: 54.5
Min nTPM: 12.0
Std nTPM: 6.7
Median nTPM: 27.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 54.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 49.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 44.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 43.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 43.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 42.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 41.0
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 40.6
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 40.2
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 39.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 39.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.9
FF:10164-103B2 76 years, female 23.9
Globus pallidus
Scaled Tags Per Million: 23.8
FF:10161-103A8 76 years, female 26.3
FF:10175-103C4 60 years, female 21.3
Nucleus accumbens
Scaled Tags Per Million: 35.5
FF:10037-101F1 23-56 years, mixed 35.5
Putamen
Scaled Tags Per Million: 25.7
FF:10176-103C5 60 years, female 25.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 18.1
Pig sample Sample description nTPM
Caudate
nTPM: 14.9
Samples: 4

Max nTPM: 17.1
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 17.1
Sample C Male 17.1
Sample D Male 13.1
Putamen
nTPM: 18.1
Samples: 4

Max nTPM: 22.5
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 15.7
Sample C Male 22.5
Sample D Male 19.1
Septum
nTPM: 12.4
Samples: 4

Max nTPM: 14.0
Min nTPM: 10.8
Sample A Female 14.0
Sample B Female 13.1
Sample C Male 10.8
Sample D Male 11.6
Ventral pallidum
nTPM: 14.0
Samples: 4

Max nTPM: 16.0
Min nTPM: 11.6
Sample A Female 11.6
Sample B Female 16.0
Sample C Male 14.6
Sample D Male 13.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 70.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 69.1
Samples: 4

Max nTPM: 74.2
Min nTPM: 65.6
Sample A Male 69.9
Sample B Male 74.2
Sample C Female 65.6
Sample D Female 66.7
Septum
nTPM: 49.1
Samples: 4

Max nTPM: 50.4
Min nTPM: 47.6
Sample A Male 50.0
Sample B Male 50.4
Sample C Female 48.2
Sample D Female 47.6
Ventral forebrain
nTPM: 70.7
Samples: 4

Max nTPM: 76.4
Min nTPM: 60.7
Sample A Male 76.4
Sample B Male 60.7
Sample C Female 74.2
Sample D Female 71.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
68076881 Antisense, RP_040923_02_H03, Mouse strain C57BL/6J (56 days, male) 1.6
Pallidum
Expression energy: 1.5
68076881 Antisense, RP_040923_02_H03, Mouse strain C57BL/6J (56 days, male) 1.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.