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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:121.0 nTPM
HPA:121.0 nTPM
GTEx:131.9 nTPM
FANTOM5:255.0 Scaled Tags Per Million
Pig:97.8 nTPM
Mouse:128.0 nTPM
Allen mouse:6.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 121.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.5
2019 Male, age 18, unknown 140.9
2411 Female, age 72, unknown 121.9
2219 Male, age 76, both hemispheres 107.0
2828 Female, age 72, unknown 100.7
1827 Male, age 72, unknown 99.9
2586 Male, age 75, left hemisphere 96.9
1870 Female, age 42, unknown 93.1
1833 Male, age 53, unknown 92.4
1830 Male, age 51, unknown 88.2
2666 Male, age 74, left hemisphere 83.7
Dorsal raphe nucleus
nTPM: 104.1
2298 Female, age 72, unknown 125.4
2750 Male, age 76, both hemispheres 109.0
1828 Male, age 53, unknown 104.2
2047 Male, age 72, unknown 91.8
2016 Female, age 72, unknown 90.2
Inferior colliculus
nTPM: 108.3
2097 Female, age 72, unknown 139.7
1890 Male, age 53, unknown 131.7
1848 Female, age 42, unknown 88.4
2849 Male, age 72, unknown 73.4
Median raphe nucleus
nTPM: 93.9
2220 Male, age 76, midline 93.9
Pedunculopontine tegmental nucleus
nTPM: 110.9
1921 Female, age 85, both hemispheres 118.3
2338 Male, age 61, both hemispheres 107.3
2334 Male, age 80, both hemispheres 107.2
Periaquaductal grey, anterior
nTPM: 99.8
2502 Female, age 75, unknown 102.2
1795 Male, age 51, unknown 100.7
1947 Male, age 18, unknown 96.4
Periaquaductal grey, dorsal
nTPM: 90.1
1831 Male, age 72, unknown 97.4
2850 Male, age 76, both hemispheres 93.3
2464 Female, age 72, unknown 92.0
1840 Male, age 53, unknown 77.6
Periaquaductal grey, lateral
nTPM: 102.3
2272 Male, age 74, both hemispheres 134.0
2140 Male, age 76, both hemispheres 93.4
2053 Male, age 18, unknown 79.5
Pretectal area
nTPM: 121.0
1817 Female, age 42, unknown 167.1
2007 Male, age 72, unknown 156.9
1816 Male, age 51, unknown 150.5
1815 Male, age 53, unknown 142.6
1944 Female, age 72, unknown 141.0
2273 Male, age 74, both hemispheres 125.1
2667 Female, age 75, unknown 107.6
2224 Female, age 72, unknown 103.3
2316 Male, age 76, right hemisphere 89.2
2825 Male, age 18, unknown 78.5
2407 Male, age 75, both hemispheres 69.5
Red nucleus
nTPM: 120.8
2785 Male, age 18, unknown 143.5
1821 Female, age 72, unknown 143.4
2725 Female, age 75, unknown 141.3
2503 Female, age 72, unknown 132.9
1904 Male, age 53, unknown 131.2
1954 Female, age 42, unknown 123.0
2823 Male, age 76, right hemisphere 118.7
2769 Male, age 72, unknown 116.3
1865 Male, age 51, unknown 116.0
2227 Male, age 72, unknown 115.7
2588 Male, age 74, left hemisphere 85.8
2584 Male, age 75, left hemisphere 81.4
Substantia nigra
nTPM: 117.0
1916 Female, age 42, unknown 183.4
1889 Female, age 72, unknown 139.4
1851 Male, age 51, unknown 135.4
2241 Male, age 72, unknown 130.6
2409 Female, age 72, unknown 124.6
2699 Male, age 18, unknown 106.5
1941 Male, age 53, unknown 103.1
2583 Male, age 75, right hemisphere 91.9
2590 Female, age 75, unknown 85.1
2665 Male, age 74, both hemispheres 69.7
Superior colliculus
nTPM: 99.4
2087 Female, age 72, unknown 125.4
2261 Male, age 18, unknown 119.3
2668 Female, age 75, unknown 114.4
1913 Female, age 42, unknown 104.0
1796 Male, age 53, unknown 102.2
1995 Male, age 72, unknown 98.4
2587 Male, age 74, left hemisphere 95.9
1895 Male, age 76, right hemisphere 90.3
1839 Male, age 51, unknown 81.6
2664 Male, age 75, both hemispheres 62.4
Ventral tegmental area
nTPM: 118.3
2410 Female, age 72, unknown 158.6
2218 Male, age 76, both hemispheres 140.1
1915 Female, age 42, unknown 129.7
1942 Male, age 51, unknown 103.7
2223 Female, age 72, unknown 89.3
2021 Male, age 53, unknown 88.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 131.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 131.9
Samples: 139

Max nTPM: 324.7
Min nTPM: 34.7
Std nTPM: 44.8
Median nTPM: 125.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 324.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 284.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 222.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 220.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 210.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 207.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 201.5
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 201.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 200.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 198.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 196.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 255.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 255.0
FF:10158-103A5 76 years, female 255.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 97.8
Pig sample Sample description nTPM
Midbrain
nTPM: 97.9
Samples: 4

Max nTPM: 153.9
Min nTPM: 54.9
Sample A Female 108.3
Sample B Female 54.9
Sample C Male 153.9
Sample D Male 74.3
Periaqueductal gray
nTPM: 54.8
Samples: 3

Max nTPM: 58.5
Min nTPM: 49.4
Sample B Female 56.5
Sample C Male 58.5
Sample D Male 49.4
Substantia nigra
nTPM: 70.5
Samples: 4

Max nTPM: 87.1
Min nTPM: 48.5
Sample A Female 86.6
Sample B Female 48.5
Sample C Male 87.1
Sample D Male 59.7
Superior colliculi
nTPM: 88.7
Samples: 4

Max nTPM: 134.7
Min nTPM: 55.3
Sample A Female 81.9
Sample B Female 55.3
Sample C Male 134.7
Sample D Male 82.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.0
Samples: 4

Max nTPM: 135.3
Min nTPM: 118.5
Sample A Male 118.5
Sample B Male 127.1
Sample C Female 135.3
Sample D Female 131.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.9
1700 Antisense, RP_040526_02_D07, Mouse strain C57BL/6J (56 days, male) 6.9
1699 Antisense, RP_040526_02_D07, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.