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ARL4C
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:14.6 nTPM
HPA:14.6 nTPM
GTEx:12.9 nTPM
FANTOM5:10.7 Scaled Tags Per Million
Pig:10.4 nTPM
Mouse:19.4 nTPM
Allen mouse:3.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA028927
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.3
2481 Female, age 94, left hemisphere 11.9
1781 Male, age 74, unknown 11.3
2288 Male, age 75, left hemisphere 10.7
2290 Female, age 72, unknown 7.3
2289 Male, age 61, right hemisphere 7.0
2846 Female, age 79, unknown 6.5
1857 Female, age 85, left hemisphere 6.3
1854 Male, age 80, left hemisphere 5.0
Claustrum
nTPM: 11.5
2568 Male, age 61, both hemispheres 13.9
2284 Female, age 91, both hemispheres 13.0
2198 Male, age 80, both hemispheres 12.2
2491 Male, age 75, both hemispheres 12.1
2392 Female, age 94, both hemispheres 11.7
2196 Female, age 79, unknown 11.6
2292 Female, age 85, both hemispheres 10.1
2645 Female, age 72, unknown 9.7
1956 Male, age 74, unknown 9.1
Globus pallidus, externus
nTPM: 9.3
2772 Female, age 79, unknown 15.7
2395 Male, age 75, both hemispheres 12.0
1996 Male, age 80, right hemisphere 7.2
2567 Female, age 72, unknown 6.3
2646 Male, age 61, right hemisphere 5.5
Globus pallidus, internus
nTPM: 6.7
1818 Male, age 74, unknown 9.4
2037 Male, age 80, right hemisphere 7.9
2483 Female, age 94, right hemisphere 6.9
2287 Male, age 75, right hemisphere 6.0
2566 Female, age 72, unknown 5.9
2111 Female, age 85, right hemisphere 5.5
2778 Female, age 91, both hemispheres 5.0
Nucleus accumbens
nTPM: 6.1
2732 Male, age 80, right hemisphere 9.2
2286 Male, age 75, left hemisphere 8.9
2391 Female, age 94, left hemisphere 6.4
2698 Female, age 72, unknown 5.6
1806 Female, age 85, left hemisphere 5.4
1783 Male, age 74, unknown 5.0
1856 Female, age 91, right hemisphere 4.8
2824 Male, age 61, right hemisphere 3.4
Nucleus basalis of Meynert
nTPM: 6.5
2821 Male, age 75, both hemispheres 10.5
2484 Female, age 94, left hemisphere 5.4
2393 Male, age 80, right hemisphere 5.0
2569 Male, age 61, both hemispheres 5.0
Nucleus of the diagonal band
nTPM: 13.4
1812 Female, age 91, both hemispheres 17.6
2775 Male, age 80, right hemisphere 14.9
2029 Male, age 61, right hemisphere 13.2
2195 Female, age 85, both hemispheres 11.3
1979 Male, age 74, unknown 10.0
Olfactory tubercle
nTPM: 14.6
1998 Female, age 91, both hemispheres 17.5
2487 Female, age 94, left hemisphere 14.8
1846 Male, age 80, right hemisphere 13.8
2856 Male, age 75, right hemisphere 12.4
Putamen
nTPM: 6.9
2647 Male, age 75, left hemisphere 9.6
2482 Female, age 94, left hemisphere 7.6
2466 Female, age 79, unknown 7.3
1829 Male, age 74, unknown 6.8
2489 Female, age 72, unknown 6.1
1937 Female, age 91, right hemisphere 5.8
1838 Male, age 80, right hemisphere 5.2
Septal nuclei
nTPM: 12.7
2009 Female, age 91, both hemispheres 18.8
2031 Female, age 72, unknown 17.8
2629 Female, age 94, right hemisphere 14.2
1960 Male, age 74, unknown 12.0
2394 Male, age 61, left hemisphere 9.2
2059 Female, age 85, both hemispheres 8.7
2199 Male, age 80, right hemisphere 8.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.9
Samples: 246

Max nTPM: 42.5
Min nTPM: 4.0
Std nTPM: 5.7
Median nTPM: 11.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 42.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 42.3
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 33.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 31.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 29.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 28.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 28.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 27.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 26.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 25.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 25.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.5
Samples: 246

Max nTPM: 33.2
Min nTPM: 1.5
Std nTPM: 4.7
Median nTPM: 5.3
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 33.2
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 30.7
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 29.8
GTEX-OHPN-0011-R6A-SM-2I5FH 60-69 years, female 27.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 22.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 21.4
GTEX-13OVH-0011-R6b-SM-5LUAX 70-79 years, male 21.3
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 20.0
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 19.5
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 19.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 17.2
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Brain - Putamen (basal ganglia)
Average nTPM: 10.4
Samples: 205

Max nTPM: 25.5
Min nTPM: 2.7
Std nTPM: 3.6
Median nTPM: 9.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 25.5
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 22.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 21.6
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 20.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 19.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 18.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 18.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 17.9
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 17.4
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 17.3
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 17.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4.2
FF:10164-103B2 76 years, female 4.2
Globus pallidus
Scaled Tags Per Million: 3.8
FF:10161-103A8 76 years, female 4.5
FF:10175-103C4 60 years, female 3.1
Nucleus accumbens
Scaled Tags Per Million: 10.7
FF:10037-101F1 23-56 years, mixed 10.7
Putamen
Scaled Tags Per Million: 4.2
FF:10176-103C5 60 years, female 4.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.4
Pig sample Sample description nTPM
Caudate
nTPM: 6.7
Samples: 4

Max nTPM: 8.0
Min nTPM: 5.8
Sample A Female 5.8
Sample B Female 6.4
Sample C Male 8.0
Sample D Male 6.6
Putamen
nTPM: 8.2
Samples: 4

Max nTPM: 11.7
Min nTPM: 6.9
Sample A Female 6.9
Sample B Female 7.0
Sample C Male 11.7
Sample D Male 7.2
Septum
nTPM: 10.5
Samples: 4

Max nTPM: 17.2
Min nTPM: 7.6
Sample A Female 8.3
Sample B Female 7.6
Sample C Male 17.2
Sample D Male 8.7
Ventral pallidum
nTPM: 8.0
Samples: 4

Max nTPM: 13.7
Min nTPM: 4.7
Sample A Female 6.2
Sample B Female 7.2
Sample C Male 13.7
Sample D Male 4.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 19.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.9
Samples: 4

Max nTPM: 15.3
Min nTPM: 13.3
Sample A Male 15.3
Sample B Male 13.3
Sample C Female 13.6
Sample D Female 13.3
Septum
nTPM: 19.4
Samples: 4

Max nTPM: 25.8
Min nTPM: 16.0
Sample A Male 25.8
Sample B Male 16.0
Sample C Female 17.4
Sample D Female 18.3
Ventral forebrain
nTPM: 16.3
Samples: 4

Max nTPM: 19.7
Min nTPM: 13.7
Sample A Male 15.7
Sample B Male 19.7
Sample C Female 13.7
Sample D Female 15.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.3
70430824 Antisense, RP_050614_02_B03, Mouse strain C57BL/6J (56 days, male) 2.7
74988455 Antisense, RP_060315_05_D10, Mouse strain C57BL/6J (56 days, male) 1.9
Pallidum
Expression energy: 3.0
70430824 Antisense, RP_050614_02_B03, Mouse strain C57BL/6J (56 days, male) 3.6
74988455 Antisense, RP_060315_05_D10, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.