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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.7 nTPM
HPA:59.7 nTPM
GTEx:79.1 nTPM
FANTOM5:121.6 Scaled Tags Per Million
Mouse:83.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.5
1870 Female, age 42, unknown 60.9
2411 Female, age 72, unknown 59.8
1827 Male, age 72, unknown 58.6
2219 Male, age 76, both hemispheres 57.8
1830 Male, age 51, unknown 57.7
2666 Male, age 74, left hemisphere 57.6
2019 Male, age 18, unknown 56.9
1833 Male, age 53, unknown 56.1
2828 Female, age 72, unknown 55.4
2586 Male, age 75, left hemisphere 54.3
Dorsal raphe nucleus
nTPM: 58.3
2298 Female, age 72, unknown 61.3
1828 Male, age 53, unknown 58.2
2047 Male, age 72, unknown 58.1
2750 Male, age 76, both hemispheres 57.4
2016 Female, age 72, unknown 56.7
Inferior colliculus
nTPM: 57.3
2097 Female, age 72, unknown 60.3
1890 Male, age 53, unknown 57.9
1848 Female, age 42, unknown 56.3
2849 Male, age 72, unknown 54.9
Median raphe nucleus
nTPM: 57.4
2220 Male, age 76, midline 57.4
Pedunculopontine tegmental nucleus
nTPM: 57.6
1921 Female, age 85, both hemispheres 58.5
2334 Male, age 80, both hemispheres 57.6
2338 Male, age 61, both hemispheres 56.6
Periaquaductal grey, anterior
nTPM: 58.4
2502 Female, age 75, unknown 60.0
1947 Male, age 18, unknown 58.1
1795 Male, age 51, unknown 57.1
Periaquaductal grey, dorsal
nTPM: 57.1
2464 Female, age 72, unknown 57.9
1840 Male, age 53, unknown 57.7
1831 Male, age 72, unknown 57.1
2850 Male, age 76, both hemispheres 55.7
Periaquaductal grey, lateral
nTPM: 56.6
2053 Male, age 18, unknown 58.8
2272 Male, age 74, both hemispheres 55.7
2140 Male, age 76, both hemispheres 55.4
Pretectal area
nTPM: 58.1
2316 Male, age 76, right hemisphere 60.5
2224 Female, age 72, unknown 59.8
2007 Male, age 72, unknown 58.8
1817 Female, age 42, unknown 58.5
1816 Male, age 51, unknown 58.3
2273 Male, age 74, both hemispheres 58.2
1815 Male, age 53, unknown 58.1
2825 Male, age 18, unknown 58.0
1944 Female, age 72, unknown 57.9
2407 Male, age 75, both hemispheres 55.7
2667 Female, age 75, unknown 55.0
Red nucleus
nTPM: 58.9
2503 Female, age 72, unknown 62.1
1821 Female, age 72, unknown 61.9
1865 Male, age 51, unknown 60.0
1904 Male, age 53, unknown 59.9
1954 Female, age 42, unknown 58.9
2227 Male, age 72, unknown 58.6
2725 Female, age 75, unknown 58.6
2588 Male, age 74, left hemisphere 58.5
2769 Male, age 72, unknown 58.4
2823 Male, age 76, right hemisphere 57.9
2785 Male, age 18, unknown 57.2
2584 Male, age 75, left hemisphere 54.7
Substantia nigra
nTPM: 58.4
2409 Female, age 72, unknown 61.5
1851 Male, age 51, unknown 60.3
1916 Female, age 42, unknown 59.1
1889 Female, age 72, unknown 58.8
2699 Male, age 18, unknown 58.7
1941 Male, age 53, unknown 58.3
2241 Male, age 72, unknown 58.3
2590 Female, age 75, unknown 58.1
2665 Male, age 74, both hemispheres 56.4
2583 Male, age 75, right hemisphere 54.3
Superior colliculus
nTPM: 57.6
2668 Female, age 75, unknown 59.7
1913 Female, age 42, unknown 58.9
1995 Male, age 72, unknown 58.9
2587 Male, age 74, left hemisphere 58.4
1895 Male, age 76, right hemisphere 57.9
1796 Male, age 53, unknown 57.7
2261 Male, age 18, unknown 57.2
1839 Male, age 51, unknown 56.5
2664 Male, age 75, both hemispheres 55.6
2087 Female, age 72, unknown 55.2
Ventral tegmental area
nTPM: 59.7
2410 Female, age 72, unknown 62.9
1915 Female, age 42, unknown 61.2
2223 Female, age 72, unknown 60.5
1942 Male, age 51, unknown 58.1
2021 Male, age 53, unknown 58.1
2218 Male, age 76, both hemispheres 57.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.1
Samples: 139

Max nTPM: 214.6
Min nTPM: 32.7
Std nTPM: 27.2
Median nTPM: 72.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 214.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 177.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 172.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 138.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 132.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 128.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 127.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 122.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 120.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 120.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 116.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 121.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 121.6
FF:10158-103A5 76 years, female 121.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 83.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.4
Samples: 4

Max nTPM: 88.8
Min nTPM: 74.2
Sample A Male 74.2
Sample B Male 85.9
Sample C Female 88.8
Sample D Female 84.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74580978 Antisense, RP_060215_02_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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