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C2orf80
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.5 nTPM
HPA:26.5 nTPM
GTEx:35.7 nTPM
FANTOM5:67.0 Scaled Tags Per Million
Pig:12.3 nTPM
Mouse:8.5 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 26.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.0
1854 Male, age 80, left hemisphere 18.2
1857 Female, age 85, left hemisphere 17.5
1781 Male, age 74, unknown 16.3
2290 Female, age 72, unknown 15.9
2846 Female, age 79, unknown 15.7
2288 Male, age 75, left hemisphere 13.5
2289 Male, age 61, right hemisphere 13.2
2481 Female, age 94, left hemisphere 9.6
Claustrum
nTPM: 12.2
2491 Male, age 75, both hemispheres 15.2
2392 Female, age 94, both hemispheres 14.7
2196 Female, age 79, unknown 14.4
2198 Male, age 80, both hemispheres 12.3
2568 Male, age 61, both hemispheres 12.1
1956 Male, age 74, unknown 11.5
2284 Female, age 91, both hemispheres 10.5
2645 Female, age 72, unknown 10.5
2292 Female, age 85, both hemispheres 8.5
Globus pallidus, externus
nTPM: 7.2
2395 Male, age 75, both hemispheres 8.3
2772 Female, age 79, unknown 7.4
2646 Male, age 61, right hemisphere 7.0
2567 Female, age 72, unknown 6.7
1996 Male, age 80, right hemisphere 6.6
Globus pallidus, internus
nTPM: 7.0
2483 Female, age 94, right hemisphere 8.5
2287 Male, age 75, right hemisphere 7.7
2037 Male, age 80, right hemisphere 7.1
2566 Female, age 72, unknown 7.0
1818 Male, age 74, unknown 6.5
2111 Female, age 85, right hemisphere 6.1
2778 Female, age 91, both hemispheres 6.1
Nucleus accumbens
nTPM: 18.0
1856 Female, age 91, right hemisphere 32.4
2824 Male, age 61, right hemisphere 21.4
1783 Male, age 74, unknown 20.2
2698 Female, age 72, unknown 18.4
1806 Female, age 85, left hemisphere 16.7
2286 Male, age 75, left hemisphere 14.0
2732 Male, age 80, right hemisphere 12.7
2391 Female, age 94, left hemisphere 8.3
Nucleus basalis of Meynert
nTPM: 11.4
2821 Male, age 75, both hemispheres 13.6
2393 Male, age 80, right hemisphere 13.2
2484 Female, age 94, left hemisphere 11.1
2569 Male, age 61, both hemispheres 7.7
Nucleus of the diagonal band
nTPM: 26.5
1812 Female, age 91, both hemispheres 33.2
2029 Male, age 61, right hemisphere 29.1
2195 Female, age 85, both hemispheres 28.2
2775 Male, age 80, right hemisphere 28.2
1979 Male, age 74, unknown 14.0
Olfactory tubercle
nTPM: 22.8
1846 Male, age 80, right hemisphere 24.7
1998 Female, age 91, both hemispheres 24.5
2487 Female, age 94, left hemisphere 23.1
2856 Male, age 75, right hemisphere 19.1
Putamen
nTPM: 14.2
1838 Male, age 80, right hemisphere 22.0
1937 Female, age 91, right hemisphere 18.0
2466 Female, age 79, unknown 16.5
1829 Male, age 74, unknown 14.8
2482 Female, age 94, left hemisphere 9.7
2647 Male, age 75, left hemisphere 9.5
2489 Female, age 72, unknown 9.3
Septal nuclei
nTPM: 21.6
1960 Male, age 74, unknown 34.1
2031 Female, age 72, unknown 31.4
2009 Female, age 91, both hemispheres 26.9
2629 Female, age 94, right hemisphere 21.6
2059 Female, age 85, both hemispheres 17.0
2394 Male, age 61, left hemisphere 11.3
2199 Male, age 80, right hemisphere 8.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 35.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 22.4
Samples: 246

Max nTPM: 86.9
Min nTPM: 1.8
Std nTPM: 14.4
Median nTPM: 20.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 86.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 70.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 64.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 64.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 58.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 58.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 53.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 53.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 52.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 51.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 49.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.7
Samples: 246

Max nTPM: 81.4
Min nTPM: 2.4
Std nTPM: 17.2
Median nTPM: 35.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 81.4
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 78.0
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 75.2
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 74.5
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 73.7
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 71.0
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 69.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 69.1
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 68.6
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 66.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 66.2
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Brain - Putamen (basal ganglia)
Average nTPM: 19.0
Samples: 205

Max nTPM: 55.1
Min nTPM: 1.8
Std nTPM: 12.4
Median nTPM: 16.2
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 55.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 54.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 51.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 51.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 49.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 46.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 45.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 45.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 45.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 45.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 43.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 63.9
FF:10164-103B2 76 years, female 63.9
Globus pallidus
Scaled Tags Per Million: 11.0
FF:10175-103C4 60 years, female 15.7
FF:10161-103A8 76 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 56.8
FF:10037-101F1 23-56 years, mixed 56.8
Putamen
Scaled Tags Per Million: 67.0
FF:10176-103C5 60 years, female 67.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 12.3
Pig sample Sample description nTPM
Caudate
nTPM: 7.6
Samples: 4

Max nTPM: 8.8
Min nTPM: 6.3
Sample A Female 8.8
Sample B Female 6.7
Sample C Male 8.6
Sample D Male 6.3
Putamen
nTPM: 6.8
Samples: 4

Max nTPM: 8.7
Min nTPM: 4.8
Sample A Female 7.6
Sample B Female 4.8
Sample C Male 8.7
Sample D Male 5.9
Septum
nTPM: 12.3
Samples: 4

Max nTPM: 16.0
Min nTPM: 8.5
Sample A Female 10.7
Sample B Female 13.8
Sample C Male 16.0
Sample D Male 8.5
Ventral pallidum
nTPM: 11.8
Samples: 4

Max nTPM: 18.2
Min nTPM: 7.3
Sample A Female 10.3
Sample B Female 11.4
Sample C Male 18.2
Sample D Male 7.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 8.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.2
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.0
Sample A Male 2.0
Sample B Male 2.6
Sample C Female 4.6
Sample D Female 3.6
Septum
nTPM: 7.2
Samples: 4

Max nTPM: 9.3
Min nTPM: 5.8
Sample A Male 9.3
Sample B Male 6.2
Sample C Female 7.6
Sample D Female 5.8
Ventral forebrain
nTPM: 8.5
Samples: 4

Max nTPM: 10.9
Min nTPM: 7.6
Sample A Male 10.9
Sample B Male 7.6
Sample C Female 7.6
Sample D Female 7.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69609007 Antisense, RP_050426_04_F09, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69609007 Antisense, RP_050426_04_F09, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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