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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:36.4 nTPM
HPA:36.4 nTPM
GTEx:37.0 nTPM
FANTOM5:30.9 Scaled Tags Per Million
Pig:14.6 nTPM
Mouse:40.2 nTPM
Allen mouse:1.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA020259
Glial cells Medium
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.9
1781 Male, age 74, unknown 34.2
2481 Female, age 94, left hemisphere 33.6
2290 Female, age 72, unknown 33.5
2846 Female, age 79, unknown 32.9
1857 Female, age 85, left hemisphere 32.8
2289 Male, age 61, right hemisphere 32.5
1854 Male, age 80, left hemisphere 32.3
2288 Male, age 75, left hemisphere 31.2
Claustrum
nTPM: 35.9
2645 Female, age 72, unknown 39.0
2491 Male, age 75, both hemispheres 38.7
2198 Male, age 80, both hemispheres 38.2
2284 Female, age 91, both hemispheres 37.6
2568 Male, age 61, both hemispheres 36.2
1956 Male, age 74, unknown 34.0
2292 Female, age 85, both hemispheres 33.5
2196 Female, age 79, unknown 33.1
2392 Female, age 94, both hemispheres 32.7
Globus pallidus, externus
nTPM: 36.4
2646 Male, age 61, right hemisphere 39.8
2567 Female, age 72, unknown 38.4
2772 Female, age 79, unknown 36.3
1996 Male, age 80, right hemisphere 35.7
2395 Male, age 75, both hemispheres 31.7
Globus pallidus, internus
nTPM: 34.5
2483 Female, age 94, right hemisphere 40.0
2111 Female, age 85, right hemisphere 35.2
2566 Female, age 72, unknown 34.7
2778 Female, age 91, both hemispheres 34.2
2287 Male, age 75, right hemisphere 33.0
1818 Male, age 74, unknown 32.8
2037 Male, age 80, right hemisphere 31.9
Nucleus accumbens
nTPM: 33.1
1783 Male, age 74, unknown 37.1
1806 Female, age 85, left hemisphere 34.0
2824 Male, age 61, right hemisphere 33.7
2732 Male, age 80, right hemisphere 33.3
1856 Female, age 91, right hemisphere 32.8
2286 Male, age 75, left hemisphere 32.3
2391 Female, age 94, left hemisphere 31.3
2698 Female, age 72, unknown 30.3
Nucleus basalis of Meynert
nTPM: 33.4
2569 Male, age 61, both hemispheres 40.8
2484 Female, age 94, left hemisphere 33.1
2393 Male, age 80, right hemisphere 31.4
2821 Male, age 75, both hemispheres 28.4
Nucleus of the diagonal band
nTPM: 35.3
2775 Male, age 80, right hemisphere 37.7
2029 Male, age 61, right hemisphere 35.9
2195 Female, age 85, both hemispheres 35.4
1812 Female, age 91, both hemispheres 34.2
1979 Male, age 74, unknown 33.2
Olfactory tubercle
nTPM: 35.9
1998 Female, age 91, both hemispheres 37.4
2487 Female, age 94, left hemisphere 37.1
2856 Male, age 75, right hemisphere 34.8
1846 Male, age 80, right hemisphere 34.4
Putamen
nTPM: 34.3
2647 Male, age 75, left hemisphere 39.4
2489 Female, age 72, unknown 35.2
2466 Female, age 79, unknown 34.1
1937 Female, age 91, right hemisphere 33.6
2482 Female, age 94, left hemisphere 33.5
1829 Male, age 74, unknown 32.6
1838 Male, age 80, right hemisphere 31.6
Septal nuclei
nTPM: 35.1
1960 Male, age 74, unknown 39.3
2059 Female, age 85, both hemispheres 38.5
2031 Female, age 72, unknown 36.6
2394 Male, age 61, left hemisphere 35.2
2009 Female, age 91, both hemispheres 33.9
2199 Male, age 80, right hemisphere 31.3
2629 Female, age 94, right hemisphere 31.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 33.3
Samples: 246

Max nTPM: 59.7
Min nTPM: 9.5
Std nTPM: 7.0
Median nTPM: 32.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 59.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 53.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 50.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 50.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 49.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 49.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 48.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 48.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 48.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 46.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 46.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 35.8
Samples: 246

Max nTPM: 74.0
Min nTPM: 12.5
Std nTPM: 9.7
Median nTPM: 34.9
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 74.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 63.1
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 57.4
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 57.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 56.6
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 56.4
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 55.3
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 55.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 54.9
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 54.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 54.2
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Brain - Putamen (basal ganglia)
Average nTPM: 37.0
Samples: 205

Max nTPM: 69.4
Min nTPM: 15.7
Std nTPM: 7.5
Median nTPM: 36.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 69.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 66.1
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 54.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 51.7
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 51.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 51.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 51.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 50.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 50.5
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 50.0
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 49.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.9
FF:10164-103B2 76 years, female 30.9
Globus pallidus
Scaled Tags Per Million: 21.4
FF:10161-103A8 76 years, female 27.1
FF:10175-103C4 60 years, female 15.7
Nucleus accumbens
Scaled Tags Per Million: 25.9
FF:10037-101F1 23-56 years, mixed 25.9
Putamen
Scaled Tags Per Million: 21.9
FF:10176-103C5 60 years, female 21.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.6
Pig sample Sample description nTPM
Caudate
nTPM: 14.6
Samples: 4

Max nTPM: 16.8
Min nTPM: 12.5
Sample A Female 12.5
Sample B Female 16.8
Sample C Male 16.3
Sample D Male 12.8
Putamen
nTPM: 13.6
Samples: 4

Max nTPM: 15.0
Min nTPM: 12.4
Sample A Female 13.5
Sample B Female 12.4
Sample C Male 15.0
Sample D Male 13.3
Septum
nTPM: 14.4
Samples: 4

Max nTPM: 18.0
Min nTPM: 11.7
Sample A Female 14.1
Sample B Female 13.9
Sample C Male 18.0
Sample D Male 11.7
Ventral pallidum
nTPM: 14.3
Samples: 4

Max nTPM: 18.1
Min nTPM: 10.6
Sample A Female 10.6
Sample B Female 15.6
Sample C Male 18.1
Sample D Male 12.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 23.4
Samples: 4

Max nTPM: 25.6
Min nTPM: 19.5
Sample A Male 19.5
Sample B Male 22.8
Sample C Female 25.6
Sample D Female 25.6
Septum
nTPM: 40.2
Samples: 4

Max nTPM: 42.3
Min nTPM: 38.1
Sample A Male 38.1
Sample B Male 42.3
Sample C Female 39.3
Sample D Female 41.0
Ventral forebrain
nTPM: 31.0
Samples: 4

Max nTPM: 31.8
Min nTPM: 30.2
Sample A Male 31.5
Sample B Male 31.8
Sample C Female 30.2
Sample D Female 30.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
69095969 Antisense, RP_050324_02_F06, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 1.5
69095969 Antisense, RP_050324_02_F06, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.