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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.1 nTPM
HPA:40.1 nTPM
GTEx:34.2 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:40.5 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.8
2586 Male, age 75, left hemisphere 48.4
2828 Female, age 72, unknown 40.0
2666 Male, age 74, left hemisphere 37.7
1827 Male, age 72, unknown 37.6
2019 Male, age 18, unknown 36.5
2411 Female, age 72, unknown 36.2
1870 Female, age 42, unknown 34.2
1830 Male, age 51, unknown 32.6
1833 Male, age 53, unknown 32.4
2219 Male, age 76, both hemispheres 32.2
Dorsal raphe nucleus
nTPM: 34.8
1828 Male, age 53, unknown 36.1
2298 Female, age 72, unknown 35.1
2047 Male, age 72, unknown 34.4
2750 Male, age 76, both hemispheres 34.2
2016 Female, age 72, unknown 34.0
Inferior colliculus
nTPM: 33.1
2097 Female, age 72, unknown 34.1
1848 Female, age 42, unknown 33.1
1890 Male, age 53, unknown 33.1
2849 Male, age 72, unknown 32.2
Median raphe nucleus
nTPM: 31.4
2220 Male, age 76, midline 31.4
Pedunculopontine tegmental nucleus
nTPM: 30.7
1921 Female, age 85, both hemispheres 32.5
2334 Male, age 80, both hemispheres 31.0
2338 Male, age 61, both hemispheres 28.6
Periaquaductal grey, anterior
nTPM: 40.1
2502 Female, age 75, unknown 42.8
1795 Male, age 51, unknown 40.1
1947 Male, age 18, unknown 37.3
Periaquaductal grey, dorsal
nTPM: 32.2
1840 Male, age 53, unknown 34.8
2464 Female, age 72, unknown 34.4
1831 Male, age 72, unknown 31.4
2850 Male, age 76, both hemispheres 28.3
Periaquaductal grey, lateral
nTPM: 31.7
2053 Male, age 18, unknown 33.7
2140 Male, age 76, both hemispheres 31.0
2272 Male, age 74, both hemispheres 30.4
Pretectal area
nTPM: 36.2
2007 Male, age 72, unknown 40.8
1816 Male, age 51, unknown 40.1
1817 Female, age 42, unknown 39.2
1944 Female, age 72, unknown 38.2
1815 Male, age 53, unknown 36.5
2407 Male, age 75, both hemispheres 35.2
2667 Female, age 75, unknown 35.2
2825 Male, age 18, unknown 34.8
2316 Male, age 76, right hemisphere 34.4
2224 Female, age 72, unknown 32.0
2273 Male, age 74, both hemispheres 31.4
Red nucleus
nTPM: 35.3
2588 Male, age 74, left hemisphere 38.7
2584 Male, age 75, left hemisphere 38.2
2785 Male, age 18, unknown 38.2
2769 Male, age 72, unknown 36.7
2227 Male, age 72, unknown 36.3
2503 Female, age 72, unknown 35.8
1954 Female, age 42, unknown 35.0
1904 Male, age 53, unknown 34.3
1821 Female, age 72, unknown 33.2
1865 Male, age 51, unknown 33.2
2823 Male, age 76, right hemisphere 32.3
2725 Female, age 75, unknown 32.0
Substantia nigra
nTPM: 35.0
2665 Male, age 74, both hemispheres 39.9
2583 Male, age 75, right hemisphere 37.5
1851 Male, age 51, unknown 37.3
1916 Female, age 42, unknown 36.7
2590 Female, age 75, unknown 35.3
1889 Female, age 72, unknown 35.2
1941 Male, age 53, unknown 34.8
2699 Male, age 18, unknown 31.9
2241 Male, age 72, unknown 31.4
2409 Female, age 72, unknown 30.1
Superior colliculus
nTPM: 36.5
2664 Male, age 75, both hemispheres 45.6
2087 Female, age 72, unknown 38.1
2668 Female, age 75, unknown 38.0
2261 Male, age 18, unknown 37.9
1796 Male, age 53, unknown 37.8
1839 Male, age 51, unknown 34.8
1995 Male, age 72, unknown 34.3
1913 Female, age 42, unknown 34.0
2587 Male, age 74, left hemisphere 33.7
1895 Male, age 76, right hemisphere 31.2
Ventral tegmental area
nTPM: 34.8
2410 Female, age 72, unknown 37.0
1942 Male, age 51, unknown 36.1
1915 Female, age 42, unknown 35.4
2218 Male, age 76, both hemispheres 33.9
2021 Male, age 53, unknown 33.7
2223 Female, age 72, unknown 32.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.2
Samples: 139

Max nTPM: 52.0
Min nTPM: 15.1
Std nTPM: 6.9
Median nTPM: 34.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 52.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 49.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 48.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 46.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 46.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 45.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 45.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 44.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 44.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 44.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 44.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.9
Pig sample Sample description nTPM
Midbrain
nTPM: 16.5
Samples: 4

Max nTPM: 20.3
Min nTPM: 14.6
Sample A Female 14.6
Sample B Female 16.0
Sample C Male 20.3
Sample D Male 15.0
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 15.3
Min nTPM: 11.1
Sample B Female 15.1
Sample C Male 15.3
Sample D Male 11.1
Substantia nigra
nTPM: 14.9
Samples: 4

Max nTPM: 17.9
Min nTPM: 11.9
Sample A Female 17.9
Sample B Female 13.5
Sample C Male 16.4
Sample D Male 11.9
Superior colliculi
nTPM: 17.9
Samples: 4

Max nTPM: 20.3
Min nTPM: 15.8
Sample A Female 17.8
Sample B Female 17.7
Sample C Male 20.3
Sample D Male 15.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.6
Samples: 4

Max nTPM: 43.3
Min nTPM: 39.0
Sample A Male 43.3
Sample B Male 39.0
Sample C Female 39.7
Sample D Female 40.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
69095969 Antisense, RP_050324_02_F06, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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