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JPT1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:43.7 nTPM
HPA:43.7 nTPM
GTEx:54.3 nTPM
FANTOM5:99.3 Scaled Tags Per Million
Pig:57.4 nTPM

CAUDATE - Antibody stainingi
Antibody HPA059729
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.8
2846 Female, age 79, unknown 40.6
1857 Female, age 85, left hemisphere 38.3
1781 Male, age 74, unknown 37.1
1854 Male, age 80, left hemisphere 36.3
2290 Female, age 72, unknown 35.0
2481 Female, age 94, left hemisphere 34.9
2288 Male, age 75, left hemisphere 33.1
2289 Male, age 61, right hemisphere 31.3
Claustrum
nTPM: 37.1
2568 Male, age 61, both hemispheres 40.2
2196 Female, age 79, unknown 38.5
2284 Female, age 91, both hemispheres 38.4
2645 Female, age 72, unknown 38.3
2198 Male, age 80, both hemispheres 37.9
2392 Female, age 94, both hemispheres 37.0
1956 Male, age 74, unknown 36.1
2491 Male, age 75, both hemispheres 35.1
2292 Female, age 85, both hemispheres 32.5
Globus pallidus, externus
nTPM: 28.2
2395 Male, age 75, both hemispheres 36.5
2772 Female, age 79, unknown 28.0
1996 Male, age 80, right hemisphere 26.7
2646 Male, age 61, right hemisphere 26.2
2567 Female, age 72, unknown 23.5
Globus pallidus, internus
nTPM: 26.8
2287 Male, age 75, right hemisphere 30.3
2483 Female, age 94, right hemisphere 28.4
2037 Male, age 80, right hemisphere 27.1
1818 Male, age 74, unknown 27.0
2566 Female, age 72, unknown 25.9
2778 Female, age 91, both hemispheres 24.9
2111 Female, age 85, right hemisphere 24.0
Nucleus accumbens
nTPM: 37.8
1856 Female, age 91, right hemisphere 49.3
1806 Female, age 85, left hemisphere 40.3
2824 Male, age 61, right hemisphere 39.6
1783 Male, age 74, unknown 38.2
2698 Female, age 72, unknown 37.2
2286 Male, age 75, left hemisphere 36.2
2732 Male, age 80, right hemisphere 31.0
2391 Female, age 94, left hemisphere 30.5
Nucleus basalis of Meynert
nTPM: 33.0
2821 Male, age 75, both hemispheres 37.7
2484 Female, age 94, left hemisphere 35.1
2393 Male, age 80, right hemisphere 33.7
2569 Male, age 61, both hemispheres 25.6
Nucleus of the diagonal band
nTPM: 43.7
2195 Female, age 85, both hemispheres 48.7
2775 Male, age 80, right hemisphere 46.3
1812 Female, age 91, both hemispheres 45.7
2029 Male, age 61, right hemisphere 40.9
1979 Male, age 74, unknown 37.0
Olfactory tubercle
nTPM: 42.0
1998 Female, age 91, both hemispheres 45.4
2487 Female, age 94, left hemisphere 43.9
1846 Male, age 80, right hemisphere 43.5
2856 Male, age 75, right hemisphere 35.2
Putamen
nTPM: 34.3
1937 Female, age 91, right hemisphere 42.7
1838 Male, age 80, right hemisphere 37.0
2466 Female, age 79, unknown 36.8
1829 Male, age 74, unknown 32.3
2482 Female, age 94, left hemisphere 32.3
2647 Male, age 75, left hemisphere 30.5
2489 Female, age 72, unknown 28.7
Septal nuclei
nTPM: 40.7
1960 Male, age 74, unknown 52.4
2031 Female, age 72, unknown 45.6
2629 Female, age 94, right hemisphere 42.0
2009 Female, age 91, both hemispheres 40.3
2059 Female, age 85, both hemispheres 39.9
2394 Male, age 61, left hemisphere 32.5
2199 Male, age 80, right hemisphere 32.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 54.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.2
Samples: 246

Max nTPM: 105.6
Min nTPM: 13.4
Std nTPM: 16.9
Median nTPM: 37.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 105.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 101.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 99.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 87.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 80.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 79.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 77.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 74.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 72.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 71.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 71.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 54.3
Samples: 246

Max nTPM: 118.4
Min nTPM: 13.9
Std nTPM: 19.5
Median nTPM: 55.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 118.4
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 107.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 99.8
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 94.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 94.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 93.3
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 91.4
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 90.8
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 88.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 87.5
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 87.4
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Brain - Putamen (basal ganglia)
Average nTPM: 37.3
Samples: 205

Max nTPM: 91.9
Min nTPM: 13.8
Std nTPM: 14.8
Median nTPM: 34.5
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 91.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 84.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 81.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 76.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 75.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 70.1
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 66.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 65.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 64.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 64.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 63.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 61.1
FF:10164-103B2 76 years, female 61.1
Globus pallidus
Scaled Tags Per Million: 43.1
FF:10175-103C4 60 years, female 63.1
FF:10161-103A8 76 years, female 23.1
Nucleus accumbens
Scaled Tags Per Million: 77.4
FF:10037-101F1 23-56 years, mixed 77.4
Putamen
Scaled Tags Per Million: 99.3
FF:10176-103C5 60 years, female 99.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 57.4
Pig sample Sample description nTPM
Caudate
nTPM: 41.4
Samples: 4

Max nTPM: 46.3
Min nTPM: 36.4
Sample A Female 40.3
Sample B Female 46.3
Sample C Male 42.7
Sample D Male 36.4
Putamen
nTPM: 34.5
Samples: 4

Max nTPM: 41.6
Min nTPM: 30.2
Sample A Female 32.2
Sample B Female 30.2
Sample C Male 41.6
Sample D Male 34.0
Septum
nTPM: 57.4
Samples: 4

Max nTPM: 81.8
Min nTPM: 45.0
Sample A Female 53.5
Sample B Female 49.2
Sample C Male 81.8
Sample D Male 45.0
Ventral pallidum
nTPM: 44.2
Samples: 4

Max nTPM: 53.3
Min nTPM: 36.5
Sample A Female 40.3
Sample B Female 46.6
Sample C Male 53.3
Sample D Male 36.5

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.