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JPT1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.8 nTPM
HPA:42.8 nTPM
GTEx:37.7 nTPM
FANTOM5:18.3 Scaled Tags Per Million
Pig:54.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.2
2219 Male, age 76, both hemispheres 41.6
1827 Male, age 72, unknown 36.0
2828 Female, age 72, unknown 34.2
2411 Female, age 72, unknown 34.0
2666 Male, age 74, left hemisphere 33.8
1870 Female, age 42, unknown 33.0
2586 Male, age 75, left hemisphere 31.0
1833 Male, age 53, unknown 30.9
1830 Male, age 51, unknown 30.1
2019 Male, age 18, unknown 27.8
Dorsal raphe nucleus
nTPM: 36.8
2298 Female, age 72, unknown 42.0
2047 Male, age 72, unknown 41.1
2750 Male, age 76, both hemispheres 37.2
1828 Male, age 53, unknown 34.7
2016 Female, age 72, unknown 29.2
Inferior colliculus
nTPM: 31.4
1848 Female, age 42, unknown 33.2
2097 Female, age 72, unknown 31.8
2849 Male, age 72, unknown 31.8
1890 Male, age 53, unknown 28.9
Median raphe nucleus
nTPM: 42.8
2220 Male, age 76, midline 42.8
Pedunculopontine tegmental nucleus
nTPM: 38.0
2334 Male, age 80, both hemispheres 39.0
2338 Male, age 61, both hemispheres 38.3
1921 Female, age 85, both hemispheres 36.8
Periaquaductal grey, anterior
nTPM: 35.1
1795 Male, age 51, unknown 37.5
1947 Male, age 18, unknown 35.2
2502 Female, age 75, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 33.3
1840 Male, age 53, unknown 36.5
2850 Male, age 76, both hemispheres 33.4
1831 Male, age 72, unknown 31.6
2464 Female, age 72, unknown 31.5
Periaquaductal grey, lateral
nTPM: 32.9
2053 Male, age 18, unknown 33.6
2272 Male, age 74, both hemispheres 32.8
2140 Male, age 76, both hemispheres 32.1
Pretectal area
nTPM: 33.0
2224 Female, age 72, unknown 39.1
1816 Male, age 51, unknown 35.5
1944 Female, age 72, unknown 35.4
2825 Male, age 18, unknown 34.4
1817 Female, age 42, unknown 33.3
2007 Male, age 72, unknown 32.8
1815 Male, age 53, unknown 32.3
2667 Female, age 75, unknown 32.0
2273 Male, age 74, both hemispheres 30.0
2407 Male, age 75, both hemispheres 29.9
2316 Male, age 76, right hemisphere 27.8
Red nucleus
nTPM: 27.8
2725 Female, age 75, unknown 32.7
2584 Male, age 75, left hemisphere 30.0
2823 Male, age 76, right hemisphere 28.3
2785 Male, age 18, unknown 27.7
1954 Female, age 42, unknown 27.3
2227 Male, age 72, unknown 27.3
2769 Male, age 72, unknown 27.1
2588 Male, age 74, left hemisphere 27.0
1821 Female, age 72, unknown 26.9
2503 Female, age 72, unknown 26.8
1865 Male, age 51, unknown 26.4
1904 Male, age 53, unknown 26.3
Substantia nigra
nTPM: 36.5
1916 Female, age 42, unknown 46.8
1851 Male, age 51, unknown 39.5
2241 Male, age 72, unknown 38.2
1941 Male, age 53, unknown 37.8
2699 Male, age 18, unknown 35.3
2665 Male, age 74, both hemispheres 35.1
2409 Female, age 72, unknown 34.9
1889 Female, age 72, unknown 34.8
2590 Female, age 75, unknown 33.0
2583 Male, age 75, right hemisphere 29.6
Superior colliculus
nTPM: 31.6
1796 Male, age 53, unknown 36.9
2261 Male, age 18, unknown 35.6
2087 Female, age 72, unknown 33.2
1895 Male, age 76, right hemisphere 32.0
1839 Male, age 51, unknown 31.7
2587 Male, age 74, left hemisphere 30.9
2668 Female, age 75, unknown 30.6
2664 Male, age 75, both hemispheres 29.6
1913 Female, age 42, unknown 28.7
1995 Male, age 72, unknown 27.2
Ventral tegmental area
nTPM: 36.2
1915 Female, age 42, unknown 39.4
2218 Male, age 76, both hemispheres 36.9
2223 Female, age 72, unknown 36.3
2410 Female, age 72, unknown 35.6
2021 Male, age 53, unknown 35.4
1942 Male, age 51, unknown 33.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.7
Samples: 139

Max nTPM: 100.6
Min nTPM: 9.2
Std nTPM: 19.5
Median nTPM: 32.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 100.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 100.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 92.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 89.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 88.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 86.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 86.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 74.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 73.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 73.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 71.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.3
FF:10158-103A5 76 years, female 18.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.0
Pig sample Sample description nTPM
Midbrain
nTPM: 50.6
Samples: 4

Max nTPM: 59.3
Min nTPM: 30.5
Sample A Female 30.5
Sample B Female 55.3
Sample C Male 59.3
Sample D Male 57.1
Periaqueductal gray
nTPM: 54.0
Samples: 3

Max nTPM: 69.5
Min nTPM: 45.9
Sample B Female 46.5
Sample C Male 69.5
Sample D Male 45.9
Substantia nigra
nTPM: 51.3
Samples: 4

Max nTPM: 79.5
Min nTPM: 22.6
Sample A Female 79.5
Sample B Female 39.8
Sample C Male 63.2
Sample D Male 22.6
Superior colliculi
nTPM: 49.5
Samples: 4

Max nTPM: 67.3
Min nTPM: 28.4
Sample A Female 67.3
Sample B Female 28.4
Sample C Male 57.4
Sample D Male 44.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.