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GIMAP5
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA:14.2 nTPM
GTEx:5.2 nTPM
FANTOM5:32.0 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.6
2290 Female, age 72, unknown 13.5
2846 Female, age 79, unknown 13.5
1781 Male, age 74, unknown 12.9
1854 Male, age 80, left hemisphere 12.8
2289 Male, age 61, right hemisphere 12.5
1857 Female, age 85, left hemisphere 12.4
2481 Female, age 94, left hemisphere 11.6
2288 Male, age 75, left hemisphere 11.4
Claustrum
nTPM: 12.1
2196 Female, age 79, unknown 13.2
2292 Female, age 85, both hemispheres 13.0
2645 Female, age 72, unknown 12.5
1956 Male, age 74, unknown 12.0
2568 Male, age 61, both hemispheres 11.9
2284 Female, age 91, both hemispheres 11.8
2392 Female, age 94, both hemispheres 11.7
2198 Male, age 80, both hemispheres 11.5
2491 Male, age 75, both hemispheres 11.1
Globus pallidus, externus
nTPM: 13.0
2567 Female, age 72, unknown 13.6
2772 Female, age 79, unknown 13.2
2646 Male, age 61, right hemisphere 13.0
1996 Male, age 80, right hemisphere 12.9
2395 Male, age 75, both hemispheres 12.4
Globus pallidus, internus
nTPM: 13.2
1818 Male, age 74, unknown 14.4
2037 Male, age 80, right hemisphere 13.8
2566 Female, age 72, unknown 13.4
2287 Male, age 75, right hemisphere 13.1
2778 Female, age 91, both hemispheres 12.9
2483 Female, age 94, right hemisphere 12.7
2111 Female, age 85, right hemisphere 12.1
Nucleus accumbens
nTPM: 12.2
1806 Female, age 85, left hemisphere 12.8
2391 Female, age 94, left hemisphere 12.7
2698 Female, age 72, unknown 12.6
1783 Male, age 74, unknown 12.3
2286 Male, age 75, left hemisphere 12.1
1856 Female, age 91, right hemisphere 11.8
2732 Male, age 80, right hemisphere 11.5
2824 Male, age 61, right hemisphere 11.5
Nucleus basalis of Meynert
nTPM: 14.2
2569 Male, age 61, both hemispheres 16.0
2821 Male, age 75, both hemispheres 14.1
2484 Female, age 94, left hemisphere 13.5
2393 Male, age 80, right hemisphere 13.3
Nucleus of the diagonal band
nTPM: 11.6
1979 Male, age 74, unknown 11.7
2195 Female, age 85, both hemispheres 11.7
1812 Female, age 91, both hemispheres 11.6
2029 Male, age 61, right hemisphere 11.6
2775 Male, age 80, right hemisphere 11.2
Olfactory tubercle
nTPM: 11.7
2856 Male, age 75, right hemisphere 12.7
2487 Female, age 94, left hemisphere 11.5
1846 Male, age 80, right hemisphere 11.4
1998 Female, age 91, both hemispheres 11.2
Putamen
nTPM: 13.0
2489 Female, age 72, unknown 14.3
2482 Female, age 94, left hemisphere 13.8
2466 Female, age 79, unknown 13.4
2647 Male, age 75, left hemisphere 12.7
1829 Male, age 74, unknown 12.4
1937 Female, age 91, right hemisphere 12.2
1838 Male, age 80, right hemisphere 11.8
Septal nuclei
nTPM: 11.8
2199 Male, age 80, right hemisphere 12.5
2394 Male, age 61, left hemisphere 12.5
2031 Female, age 72, unknown 12.1
2059 Female, age 85, both hemispheres 11.6
2629 Female, age 94, right hemisphere 11.6
2009 Female, age 91, both hemispheres 11.4
1960 Male, age 74, unknown 11.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 5.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 4.6
Samples: 246

Max nTPM: 35.2
Min nTPM: 0.0
Std nTPM: 3.9
Median nTPM: 3.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 35.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 17.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 15.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 14.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 14.0
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 13.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 13.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 12.8
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 12.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 12.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 11.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.8
Samples: 246

Max nTPM: 51.3
Min nTPM: 0.1
Std nTPM: 5.0
Median nTPM: 2.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 51.3
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 40.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 18.3
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 15.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 15.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 13.6
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 13.6
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 13.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 13.2
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 12.6
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 12.0
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Brain - Putamen (basal ganglia)
Average nTPM: 5.2
Samples: 205

Max nTPM: 21.1
Min nTPM: 0.2
Std nTPM: 4.2
Median nTPM: 4.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 21.1
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 19.9
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 18.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 17.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 16.1
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 15.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 15.8
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 15.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 15.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 15.0
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 14.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 29.1
FF:10164-103B2 76 years, female 29.1
Globus pallidus
Scaled Tags Per Million: 32.0
FF:10161-103A8 76 years, female 37.2
FF:10175-103C4 60 years, female 26.8
Nucleus accumbens
Scaled Tags Per Million: 16.5
FF:10037-101F1 23-56 years, mixed 16.5
Putamen
Scaled Tags Per Million: 19.6
FF:10176-103C5 60 years, female 19.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.