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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.1 nTPM
HPA:51.1 nTPM
GTEx:39.3 nTPM
FANTOM5:21.8 Scaled Tags Per Million
Pig:25.2 nTPM
Mouse:37.8 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.9
2219 Male, age 76, both hemispheres 35.6
2586 Male, age 75, left hemisphere 32.0
1833 Male, age 53, unknown 23.9
1870 Female, age 42, unknown 23.0
1830 Male, age 51, unknown 22.3
2666 Male, age 74, left hemisphere 20.0
2828 Female, age 72, unknown 19.9
2411 Female, age 72, unknown 19.4
2019 Male, age 18, unknown 17.6
1827 Male, age 72, unknown 15.1
Dorsal raphe nucleus
nTPM: 31.1
2047 Male, age 72, unknown 38.5
2750 Male, age 76, both hemispheres 37.9
2298 Female, age 72, unknown 30.8
2016 Female, age 72, unknown 26.9
1828 Male, age 53, unknown 21.3
Inferior colliculus
nTPM: 20.2
1890 Male, age 53, unknown 21.9
2849 Male, age 72, unknown 21.4
1848 Female, age 42, unknown 20.8
2097 Female, age 72, unknown 16.9
Median raphe nucleus
nTPM: 51.1
2220 Male, age 76, midline 51.1
Pedunculopontine tegmental nucleus
nTPM: 27.1
2338 Male, age 61, both hemispheres 35.6
2334 Male, age 80, both hemispheres 26.0
1921 Female, age 85, both hemispheres 19.6
Periaquaductal grey, anterior
nTPM: 20.9
2502 Female, age 75, unknown 27.1
1795 Male, age 51, unknown 20.9
1947 Male, age 18, unknown 14.8
Periaquaductal grey, dorsal
nTPM: 22.2
2850 Male, age 76, both hemispheres 25.5
1831 Male, age 72, unknown 24.8
1840 Male, age 53, unknown 20.7
2464 Female, age 72, unknown 17.7
Periaquaductal grey, lateral
nTPM: 25.4
2053 Male, age 18, unknown 26.7
2272 Male, age 74, both hemispheres 25.9
2140 Male, age 76, both hemispheres 23.7
Pretectal area
nTPM: 19.0
2224 Female, age 72, unknown 25.4
2825 Male, age 18, unknown 23.8
2407 Male, age 75, both hemispheres 20.0
2273 Male, age 74, both hemispheres 19.2
2667 Female, age 75, unknown 19.1
1944 Female, age 72, unknown 18.6
2316 Male, age 76, right hemisphere 17.8
1817 Female, age 42, unknown 17.7
1815 Male, age 53, unknown 17.2
2007 Male, age 72, unknown 15.9
1816 Male, age 51, unknown 14.6
Red nucleus
nTPM: 24.6
2588 Male, age 74, left hemisphere 29.3
1821 Female, age 72, unknown 28.8
2584 Male, age 75, left hemisphere 28.5
2769 Male, age 72, unknown 26.1
2227 Male, age 72, unknown 25.9
1904 Male, age 53, unknown 25.1
1954 Female, age 42, unknown 23.6
2503 Female, age 72, unknown 23.3
2725 Female, age 75, unknown 23.0
2785 Male, age 18, unknown 21.3
1865 Male, age 51, unknown 21.2
2823 Male, age 76, right hemisphere 19.5
Substantia nigra
nTPM: 35.5
2699 Male, age 18, unknown 59.9
1941 Male, age 53, unknown 48.5
2665 Male, age 74, both hemispheres 42.7
1851 Male, age 51, unknown 37.8
2241 Male, age 72, unknown 32.9
1916 Female, age 42, unknown 32.6
2583 Male, age 75, right hemisphere 28.4
2590 Female, age 75, unknown 26.5
2409 Female, age 72, unknown 24.4
1889 Female, age 72, unknown 21.3
Superior colliculus
nTPM: 18.9
2587 Male, age 74, left hemisphere 23.0
1839 Male, age 51, unknown 22.6
2664 Male, age 75, both hemispheres 20.0
1995 Male, age 72, unknown 19.7
1913 Female, age 42, unknown 19.3
2668 Female, age 75, unknown 18.4
2087 Female, age 72, unknown 16.8
1796 Male, age 53, unknown 16.7
2261 Male, age 18, unknown 16.5
1895 Male, age 76, right hemisphere 16.1
Ventral tegmental area
nTPM: 29.1
1915 Female, age 42, unknown 33.4
2021 Male, age 53, unknown 31.5
1942 Male, age 51, unknown 30.9
2218 Male, age 76, both hemispheres 29.7
2223 Female, age 72, unknown 27.2
2410 Female, age 72, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.3
Samples: 139

Max nTPM: 86.6
Min nTPM: 18.4
Std nTPM: 12.0
Median nTPM: 37.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 86.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 75.9
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 74.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 73.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 67.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 63.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 58.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 57.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 56.5
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 56.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 55.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.8
FF:10158-103A5 76 years, female 21.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.2
Pig sample Sample description nTPM
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 21.4
Min nTPM: 10.5
Sample A Female 21.4
Sample B Female 14.4
Sample C Male 10.5
Sample D Male 15.8
Periaqueductal gray
nTPM: 16.4
Samples: 3

Max nTPM: 19.2
Min nTPM: 13.7
Sample B Female 16.2
Sample C Male 19.2
Sample D Male 13.7
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 21.5
Min nTPM: 16.1
Sample A Female 16.6
Sample B Female 21.5
Sample C Male 16.1
Sample D Male 17.2
Superior colliculi
nTPM: 25.2
Samples: 4

Max nTPM: 48.3
Min nTPM: 10.9
Sample A Female 25.3
Sample B Female 48.3
Sample C Male 10.9
Sample D Male 16.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.8
Samples: 4

Max nTPM: 41.8
Min nTPM: 33.5
Sample A Male 33.5
Sample B Male 34.2
Sample C Female 41.6
Sample D Female 41.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
72007935 Antisense, RP_051017_01_B04, Mouse strain C57BL/6J (56 days, male) 5.6
68193070 Antisense, RP_040916_02_D02, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.