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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.5 nTPM
HPA:29.5 nTPM
GTEx:29.7 nTPM
FANTOM5:70.8 Scaled Tags Per Million
Pig:39.2 nTPM
Mouse:71.3 nTPM
Allen mouse:7.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.6
1830 Male, age 51, unknown 30.2
1870 Female, age 42, unknown 28.9
1833 Male, age 53, unknown 28.4
1827 Male, age 72, unknown 27.7
2019 Male, age 18, unknown 27.0
2219 Male, age 76, both hemispheres 26.9
2411 Female, age 72, unknown 26.9
2666 Male, age 74, left hemisphere 24.9
2828 Female, age 72, unknown 23.3
2586 Male, age 75, left hemisphere 22.2
Dorsal raphe nucleus
nTPM: 24.9
2750 Male, age 76, both hemispheres 30.6
2016 Female, age 72, unknown 25.5
1828 Male, age 53, unknown 23.9
2047 Male, age 72, unknown 23.5
2298 Female, age 72, unknown 21.2
Inferior colliculus
nTPM: 26.5
2849 Male, age 72, unknown 28.3
1848 Female, age 42, unknown 26.0
1890 Male, age 53, unknown 26.0
2097 Female, age 72, unknown 25.7
Median raphe nucleus
nTPM: 28.7
2220 Male, age 76, midline 28.7
Pedunculopontine tegmental nucleus
nTPM: 29.0
2338 Male, age 61, both hemispheres 33.1
2334 Male, age 80, both hemispheres 27.6
1921 Female, age 85, both hemispheres 26.4
Periaquaductal grey, anterior
nTPM: 24.4
1947 Male, age 18, unknown 27.6
2502 Female, age 75, unknown 23.0
1795 Male, age 51, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 26.1
2464 Female, age 72, unknown 27.6
2850 Male, age 76, both hemispheres 26.8
1831 Male, age 72, unknown 25.1
1840 Male, age 53, unknown 24.7
Periaquaductal grey, lateral
nTPM: 25.9
2140 Male, age 76, both hemispheres 26.6
2272 Male, age 74, both hemispheres 25.7
2053 Male, age 18, unknown 25.4
Pretectal area
nTPM: 27.3
2316 Male, age 76, right hemisphere 29.5
2667 Female, age 75, unknown 28.9
2407 Male, age 75, both hemispheres 28.3
2825 Male, age 18, unknown 28.1
1815 Male, age 53, unknown 28.0
2007 Male, age 72, unknown 27.5
1817 Female, age 42, unknown 27.4
1816 Male, age 51, unknown 26.1
1944 Female, age 72, unknown 25.7
2224 Female, age 72, unknown 25.6
2273 Male, age 74, both hemispheres 25.4
Red nucleus
nTPM: 29.5
2823 Male, age 76, right hemisphere 32.6
1904 Male, age 53, unknown 31.2
1954 Female, age 42, unknown 31.2
1865 Male, age 51, unknown 31.1
1821 Female, age 72, unknown 30.6
2503 Female, age 72, unknown 30.2
2725 Female, age 75, unknown 30.2
2785 Male, age 18, unknown 28.9
2769 Male, age 72, unknown 27.4
2584 Male, age 75, left hemisphere 27.1
2588 Male, age 74, left hemisphere 27.0
2227 Male, age 72, unknown 26.8
Substantia nigra
nTPM: 26.2
2409 Female, age 72, unknown 32.3
2241 Male, age 72, unknown 29.6
1889 Female, age 72, unknown 26.8
1941 Male, age 53, unknown 26.8
2583 Male, age 75, right hemisphere 26.7
2590 Female, age 75, unknown 26.1
1851 Male, age 51, unknown 24.3
2699 Male, age 18, unknown 23.6
2665 Male, age 74, both hemispheres 23.2
1916 Female, age 42, unknown 22.6
Superior colliculus
nTPM: 26.5
1895 Male, age 76, right hemisphere 30.4
1913 Female, age 42, unknown 28.3
1839 Male, age 51, unknown 27.0
2587 Male, age 74, left hemisphere 27.0
1995 Male, age 72, unknown 26.6
2087 Female, age 72, unknown 26.2
2261 Male, age 18, unknown 25.6
2668 Female, age 75, unknown 25.6
1796 Male, age 53, unknown 25.1
2664 Male, age 75, both hemispheres 23.0
Ventral tegmental area
nTPM: 25.7
2218 Male, age 76, both hemispheres 28.6
2223 Female, age 72, unknown 28.2
1942 Male, age 51, unknown 25.0
2021 Male, age 53, unknown 25.0
1915 Female, age 42, unknown 23.6
2410 Female, age 72, unknown 23.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.7
Samples: 139

Max nTPM: 53.9
Min nTPM: 19.1
Std nTPM: 5.3
Median nTPM: 29.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 53.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 46.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 44.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 42.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 41.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 40.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 39.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 38.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 37.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 37.0
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 36.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.8
FF:10158-103A5 76 years, female 70.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.2
Pig sample Sample description nTPM
Midbrain
nTPM: 36.8
Samples: 4

Max nTPM: 47.3
Min nTPM: 29.6
Sample A Female 33.7
Sample B Female 29.6
Sample C Male 47.3
Sample D Male 36.7
Periaqueductal gray
nTPM: 29.1
Samples: 3

Max nTPM: 33.0
Min nTPM: 26.3
Sample B Female 26.3
Sample C Male 33.0
Sample D Male 27.9
Substantia nigra
nTPM: 27.4
Samples: 4

Max nTPM: 33.5
Min nTPM: 22.9
Sample A Female 33.5
Sample B Female 25.0
Sample C Male 28.0
Sample D Male 22.9
Superior colliculi
nTPM: 39.3
Samples: 4

Max nTPM: 49.6
Min nTPM: 31.9
Sample A Female 40.3
Sample B Female 31.9
Sample C Male 49.6
Sample D Male 35.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.4
Samples: 4

Max nTPM: 74.3
Min nTPM: 69.4
Sample A Male 69.4
Sample B Male 70.7
Sample C Female 74.3
Sample D Female 71.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.2
100145444 Antisense, RP_110519_03_E09, Mouse strain C57BL/6J (56 days, male) 7.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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