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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.9 nTPM
HPA:8.9 nTPM
GTEx:7.3 nTPM
FANTOM5:101.7 Scaled Tags Per Million
Pig:37.0 nTPM
Mouse:40.6 nTPM
Allen mouse:2.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.0
1781 Male, age 74, unknown 0.0
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 1.3
2284 Female, age 91, both hemispheres 5.2
2491 Male, age 75, both hemispheres 3.4
2568 Male, age 61, both hemispheres 2.6
2392 Female, age 94, both hemispheres 0.8
1956 Male, age 74, unknown 0.0
2196 Female, age 79, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
2645 Female, age 72, unknown 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.2
1856 Female, age 91, right hemisphere 2.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 4.1
2029 Male, age 61, right hemisphere 9.0
2775 Male, age 80, right hemisphere 5.3
1812 Female, age 91, both hemispheres 5.1
2195 Female, age 85, both hemispheres 1.0
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 8.9
1998 Female, age 91, both hemispheres 15.7
2487 Female, age 94, left hemisphere 8.9
2856 Male, age 75, right hemisphere 8.7
1846 Male, age 80, right hemisphere 2.3
Putamen
nTPM: 0.0
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 1.6
2629 Female, age 94, right hemisphere 3.5
1960 Male, age 74, unknown 3.4
2031 Female, age 72, unknown 2.3
2009 Female, age 91, both hemispheres 1.9
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.6
Samples: 246

Max nTPM: 26.7
Min nTPM: 0.6
Std nTPM: 3.7
Median nTPM: 6.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 26.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 19.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 16.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 16.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 15.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 14.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 13.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 13.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 13.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 13.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 13.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.3
Samples: 246

Max nTPM: 17.7
Min nTPM: 0.7
Std nTPM: 3.5
Median nTPM: 7.3
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 17.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 16.3
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 14.2
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 14.1
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 13.9
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 13.6
GTEX-13OVL-0011-R6a-SM-5L3G4 50-59 years, male 13.5
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 13.5
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 13.5
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 13.5
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 13.4
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Brain - Putamen (basal ganglia)
Average nTPM: 6.3
Samples: 205

Max nTPM: 15.0
Min nTPM: 0.5
Std nTPM: 3.4
Median nTPM: 6.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 15.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 14.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 14.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 13.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 13.3
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 13.3
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 13.2
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 13.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 12.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 12.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 12.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.7
FF:10164-103B2 76 years, female 59.7
Globus pallidus
Scaled Tags Per Million: 34.4
FF:10175-103C4 60 years, female 56.8
FF:10161-103A8 76 years, female 12.1
Nucleus accumbens
Scaled Tags Per Million: 101.7
FF:10037-101F1 23-56 years, mixed 101.7
Putamen
Scaled Tags Per Million: 68.7
FF:10176-103C5 60 years, female 68.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.0
Pig sample Sample description nTPM
Caudate
nTPM: 30.4
Samples: 4

Max nTPM: 37.1
Min nTPM: 22.6
Sample A Female 22.6
Sample B Female 29.5
Sample C Male 37.1
Sample D Male 32.4
Putamen
nTPM: 37.0
Samples: 4

Max nTPM: 57.7
Min nTPM: 15.6
Sample A Female 15.6
Sample B Female 35.3
Sample C Male 57.7
Sample D Male 39.3
Septum
nTPM: 17.9
Samples: 4

Max nTPM: 19.4
Min nTPM: 16.8
Sample A Female 17.8
Sample B Female 19.4
Sample C Male 17.6
Sample D Male 16.8
Ventral pallidum
nTPM: 24.0
Samples: 4

Max nTPM: 29.2
Min nTPM: 20.8
Sample A Female 23.6
Sample B Female 22.5
Sample C Male 29.2
Sample D Male 20.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.6
Samples: 4

Max nTPM: 41.6
Min nTPM: 39.3
Sample A Male 41.6
Sample B Male 41.2
Sample C Female 40.2
Sample D Female 39.3
Septum
nTPM: 25.0
Samples: 4

Max nTPM: 29.0
Min nTPM: 21.3
Sample A Male 29.0
Sample B Male 24.1
Sample C Female 21.3
Sample D Female 25.4
Ventral forebrain
nTPM: 36.3
Samples: 4

Max nTPM: 39.9
Min nTPM: 31.1
Sample A Male 36.6
Sample B Male 37.5
Sample C Female 31.1
Sample D Female 39.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
69863261 Antisense, RP_050331_04_E04, Mouse strain C57BL/6J (56 days, male) 2.5
Pallidum
Expression energy: 1.5
69863261 Antisense, RP_050331_04_E04, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.