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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.9 nTPM
HPA:17.9 nTPM
GTEx:12.4 nTPM
FANTOM5:39.3 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:34.6 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.3
1833 Male, age 53, unknown 18.9
2411 Female, age 72, unknown 18.8
1870 Female, age 42, unknown 18.7
2828 Female, age 72, unknown 18.2
1830 Male, age 51, unknown 17.5
2219 Male, age 76, both hemispheres 16.5
2019 Male, age 18, unknown 16.4
1827 Male, age 72, unknown 16.3
2586 Male, age 75, left hemisphere 16.0
2666 Male, age 74, left hemisphere 15.9
Dorsal raphe nucleus
nTPM: 16.5
2016 Female, age 72, unknown 19.2
2047 Male, age 72, unknown 17.4
2750 Male, age 76, both hemispheres 16.7
1828 Male, age 53, unknown 15.4
2298 Female, age 72, unknown 13.8
Inferior colliculus
nTPM: 17.3
2097 Female, age 72, unknown 17.5
1890 Male, age 53, unknown 17.3
2849 Male, age 72, unknown 17.3
1848 Female, age 42, unknown 17.2
Median raphe nucleus
nTPM: 16.7
2220 Male, age 76, midline 16.7
Pedunculopontine tegmental nucleus
nTPM: 17.9
1921 Female, age 85, both hemispheres 18.5
2338 Male, age 61, both hemispheres 18.0
2334 Male, age 80, both hemispheres 17.3
Periaquaductal grey, anterior
nTPM: 15.8
2502 Female, age 75, unknown 17.1
1947 Male, age 18, unknown 15.5
1795 Male, age 51, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 17.2
2464 Female, age 72, unknown 18.3
1831 Male, age 72, unknown 17.1
1840 Male, age 53, unknown 17.1
2850 Male, age 76, both hemispheres 16.4
Periaquaductal grey, lateral
nTPM: 17.0
2053 Male, age 18, unknown 18.2
2140 Male, age 76, both hemispheres 17.7
2272 Male, age 74, both hemispheres 14.9
Pretectal area
nTPM: 17.0
2407 Male, age 75, both hemispheres 19.5
2316 Male, age 76, right hemisphere 19.1
2825 Male, age 18, unknown 18.7
2667 Female, age 75, unknown 18.0
2224 Female, age 72, unknown 17.9
2273 Male, age 74, both hemispheres 16.7
1944 Female, age 72, unknown 16.4
1816 Male, age 51, unknown 15.8
1815 Male, age 53, unknown 15.4
2007 Male, age 72, unknown 14.8
1817 Female, age 42, unknown 14.3
Red nucleus
nTPM: 17.7
1904 Male, age 53, unknown 19.8
1865 Male, age 51, unknown 18.8
2588 Male, age 74, left hemisphere 18.8
2503 Female, age 72, unknown 18.7
2769 Male, age 72, unknown 18.6
2823 Male, age 76, right hemisphere 17.9
1954 Female, age 42, unknown 17.7
2227 Male, age 72, unknown 17.5
2785 Male, age 18, unknown 17.3
1821 Female, age 72, unknown 16.2
2584 Male, age 75, left hemisphere 15.6
2725 Female, age 75, unknown 15.1
Substantia nigra
nTPM: 16.6
2409 Female, age 72, unknown 20.4
2241 Male, age 72, unknown 18.3
2590 Female, age 75, unknown 17.0
1941 Male, age 53, unknown 16.5
1916 Female, age 42, unknown 16.4
2583 Male, age 75, right hemisphere 16.0
2699 Male, age 18, unknown 16.0
1889 Female, age 72, unknown 15.6
2665 Male, age 74, both hemispheres 15.1
1851 Male, age 51, unknown 15.0
Superior colliculus
nTPM: 16.9
1895 Male, age 76, right hemisphere 19.6
1839 Male, age 51, unknown 18.6
1913 Female, age 42, unknown 18.3
1796 Male, age 53, unknown 16.7
1995 Male, age 72, unknown 16.7
2668 Female, age 75, unknown 16.4
2087 Female, age 72, unknown 16.0
2587 Male, age 74, left hemisphere 15.9
2261 Male, age 18, unknown 15.8
2664 Male, age 75, both hemispheres 14.8
Ventral tegmental area
nTPM: 16.5
1942 Male, age 51, unknown 17.5
2223 Female, age 72, unknown 17.4
1915 Female, age 42, unknown 16.9
2218 Male, age 76, both hemispheres 16.0
2021 Male, age 53, unknown 15.9
2410 Female, age 72, unknown 15.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.4
Samples: 139

Max nTPM: 22.6
Min nTPM: 6.4
Std nTPM: 2.9
Median nTPM: 12.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 22.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 21.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 21.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 21.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 18.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 18.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 18.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 17.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 17.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 16.6
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 16.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 39.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 39.3
FF:10158-103A5 76 years, female 39.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.2
Pig sample Sample description nTPM
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 8.8
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 6.5
Sample C Male 8.8
Sample D Male 8.1
Periaqueductal gray
nTPM: 6.7
Samples: 3

Max nTPM: 6.9
Min nTPM: 6.6
Sample B Female 6.6
Sample C Male 6.9
Sample D Male 6.7
Substantia nigra
nTPM: 6.0
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.4
Sample A Female 6.2
Sample B Female 5.4
Sample C Male 6.7
Sample D Male 5.6
Superior colliculi
nTPM: 7.3
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.8
Sample A Female 7.3
Sample B Female 5.8
Sample C Male 8.5
Sample D Male 7.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.7
Samples: 4

Max nTPM: 36.2
Min nTPM: 32.3
Sample A Male 34.5
Sample B Male 35.6
Sample C Female 36.2
Sample D Female 32.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
70611234 Antisense, RP_050630_02_D07, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.