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TBC1D9B
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:51.4 nTPM
HPA:51.4 nTPM
GTEx:70.7 nTPM
FANTOM5:49.2 Scaled Tags Per Million
Pig:63.9 nTPM
Mouse:105.8 nTPM
Allen mouse:6.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038350
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 51.4
Sample id Sample description nTPM
Hippocampus
nTPM: 49.8
1855 Male, age 76, left hemisphere 52.1
1898 Male, age 80, left hemisphere 51.9
2148 Female, age 91, left hemisphere 51.3
2529 Female, age 94, left hemisphere 50.4
1911 Female, age 85, right hemisphere 46.7
2621 Female, age 67, right hemisphere 46.1
Dentate gyrus
nTPM: 49.2
2530 Female, age 94, left hemisphere 56.3
2010 Male, age 76, both hemispheres 51.9
2528 Male, age 74, both hemispheres 47.9
2531 Female, age 67, both hemispheres 47.5
2246 Female, age 85, both hemispheres 46.3
1927 Female, age 91, both hemispheres 45.6
Entorhinal gyrus
nTPM: 51.4
2117 Female, age 91, right hemisphere 55.5
2764 Male, age 80, right hemisphere 53.9
2613 Female, age 94, left hemisphere 52.5
1787 Male, age 76, left hemisphere 50.5
1938 Female, age 85, left hemisphere 48.4
2686 Male, age 75, right hemisphere 47.8
Hippocampus, CA1
nTPM: 50.8
2749 Male, age 80, left hemisphere 59.0
2045 Male, age 76, both hemispheres 52.5
1873 Female, age 85, both hemispheres 49.5
2082 Female, age 91, right hemisphere 47.0
2527 Male, age 74, both hemispheres 46.1
Hippocampus, CA2
nTPM: 48.9
1963 Male, age 80, left hemisphere 54.4
1892 Male, age 76, both hemispheres 49.5
2437 Female, age 94, left hemisphere 49.3
2113 Female, age 91, right hemisphere 47.9
1940 Female, age 85, left hemisphere 47.0
2249 Male, age 74, both hemispheres 45.4
Hippocampus, CA3
nTPM: 47.6
2620 Female, age 94, left hemisphere 52.3
2137 Male, age 80, left hemisphere 52.1
2861 Female, age 67, both hemispheres 47.2
1867 Male, age 76, both hemispheres 47.0
1891 Female, age 85, both hemispheres 45.3
2436 Male, age 74, both hemispheres 42.0
Parahippocampal cortex
nTPM: 45.6
2018 Male, age 76, both hemispheres 49.2
2692 Male, age 74, both hemispheres 48.6
1850 Male, age 80, both hemispheres 47.7
2245 Female, age 91, both hemispheres 46.9
2622 Female, age 67, right hemisphere 46.7
1990 Female, age 91, right hemisphere 45.9
1933 Female, age 85, both hemispheres 45.8
2532 Female, age 72, left hemisphere 44.7
2693 Female, age 94, both hemispheres 40.8
2250 Female, age 67, right hemisphere 40.1
Perirhinal gyrus
nTPM: 45.3
1794 Male, age 80, right hemisphere 47.9
1847 Female, age 91, left hemisphere 47.2
2848 Male, age 76, right hemisphere 45.2
1841 Female, age 85, right hemisphere 43.6
2521 Female, age 94, right hemisphere 42.4
Subiculum
nTPM: 45.5
1901 Male, age 80, both hemispheres 48.4
2729 Female, age 91, right hemisphere 48.0
2619 Male, age 74, both hemispheres 47.0
1977 Female, age 85, both hemispheres 46.4
2042 Male, age 76, both hemispheres 45.4
2438 Female, age 94, left hemisphere 37.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 70.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 70.7
Samples: 197

Max nTPM: 138.5
Min nTPM: 16.9
Std nTPM: 15.9
Median nTPM: 69.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 138.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 123.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 120.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 117.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 115.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 109.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 106.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 100.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 99.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 99.4
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 98.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.2
FF:10153-102I9 76 years, female 66.0
FF:10169-103B7 60 years, female 32.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 63.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 64.0
Samples: 4

Max nTPM: 85.6
Min nTPM: 41.9
Sample A Female 85.6
Sample B Female 62.5
Sample C Male 65.8
Sample D Male 41.9
Entorhinal cortex
nTPM: 57.7
Samples: 4

Max nTPM: 61.8
Min nTPM: 50.8
Sample A Female 58.9
Sample B Female 59.1
Sample C Male 61.8
Sample D Male 50.8
Subiculum
nTPM: 57.5
Samples: 4

Max nTPM: 70.6
Min nTPM: 49.9
Sample A Female 70.6
Sample B Female 56.3
Sample C Male 53.2
Sample D Male 49.9
Ventral hippocampus
nTPM: 57.3
Samples: 4

Max nTPM: 65.4
Min nTPM: 43.1
Sample A Female 62.4
Sample B Female 43.1
Sample C Male 65.4
Sample D Male 58.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 105.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 105.8
Samples: 4

Max nTPM: 108.3
Min nTPM: 103.2
Sample A Male 108.3
Sample B Male 103.2
Sample C Female 106.8
Sample D Female 104.9
Hippocampal formation
nTPM: 82.9
Samples: 4

Max nTPM: 92.4
Min nTPM: 75.3
Sample A Male 92.4
Sample B Male 75.4
Sample C Female 75.3
Sample D Female 88.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.7
70542909 Antisense, RP_050324_04_G06, Mouse strain C57BL/6J (56 days, male) 6.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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