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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:106.0 nTPM
HPA:106.0 nTPM
GTEx:79.1 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:314.0 nTPM
Mouse:62.1 nTPM
Allen mouse:3.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 106.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.0
1833 Male, age 53, unknown 108.5
1830 Male, age 51, unknown 101.2
2411 Female, age 72, unknown 97.3
2219 Male, age 76, both hemispheres 94.3
2828 Female, age 72, unknown 85.4
2586 Male, age 75, left hemisphere 84.0
1870 Female, age 42, unknown 83.4
2019 Male, age 18, unknown 81.2
1827 Male, age 72, unknown 79.2
2666 Male, age 74, left hemisphere 75.3
Dorsal raphe nucleus
nTPM: 73.7
2750 Male, age 76, both hemispheres 89.6
2016 Female, age 72, unknown 84.3
1828 Male, age 53, unknown 71.4
2298 Female, age 72, unknown 63.1
2047 Male, age 72, unknown 60.3
Inferior colliculus
nTPM: 73.2
2849 Male, age 72, unknown 83.8
1848 Female, age 42, unknown 72.7
2097 Female, age 72, unknown 69.2
1890 Male, age 53, unknown 67.2
Median raphe nucleus
nTPM: 62.4
2220 Male, age 76, midline 62.4
Pedunculopontine tegmental nucleus
nTPM: 73.6
1921 Female, age 85, both hemispheres 80.1
2334 Male, age 80, both hemispheres 78.5
2338 Male, age 61, both hemispheres 62.1
Periaquaductal grey, anterior
nTPM: 78.3
2502 Female, age 75, unknown 92.0
1947 Male, age 18, unknown 77.8
1795 Male, age 51, unknown 65.0
Periaquaductal grey, dorsal
nTPM: 68.7
2464 Female, age 72, unknown 88.2
1840 Male, age 53, unknown 63.0
1831 Male, age 72, unknown 62.5
2850 Male, age 76, both hemispheres 61.2
Periaquaductal grey, lateral
nTPM: 71.2
2272 Male, age 74, both hemispheres 77.6
2053 Male, age 18, unknown 74.0
2140 Male, age 76, both hemispheres 62.0
Pretectal area
nTPM: 73.6
2316 Male, age 76, right hemisphere 101.0
1815 Male, age 53, unknown 89.3
2407 Male, age 75, both hemispheres 79.8
2825 Male, age 18, unknown 79.5
1817 Female, age 42, unknown 76.5
2224 Female, age 72, unknown 69.0
2007 Male, age 72, unknown 68.7
2273 Male, age 74, both hemispheres 66.7
1816 Male, age 51, unknown 62.7
2667 Female, age 75, unknown 60.6
1944 Female, age 72, unknown 55.3
Red nucleus
nTPM: 106.0
1904 Male, age 53, unknown 130.8
1865 Male, age 51, unknown 117.6
2503 Female, age 72, unknown 117.2
1821 Female, age 72, unknown 115.7
2823 Male, age 76, right hemisphere 108.9
2769 Male, age 72, unknown 105.6
2227 Male, age 72, unknown 105.5
2588 Male, age 74, left hemisphere 101.0
1954 Female, age 42, unknown 100.6
2785 Male, age 18, unknown 97.3
2584 Male, age 75, left hemisphere 87.9
2725 Female, age 75, unknown 83.7
Substantia nigra
nTPM: 76.0
2409 Female, age 72, unknown 96.7
2590 Female, age 75, unknown 89.5
1851 Male, age 51, unknown 81.2
2699 Male, age 18, unknown 80.9
2241 Male, age 72, unknown 78.7
1889 Female, age 72, unknown 70.1
2583 Male, age 75, right hemisphere 70.1
2665 Male, age 74, both hemispheres 68.2
1941 Male, age 53, unknown 63.2
1916 Female, age 42, unknown 61.3
Superior colliculus
nTPM: 85.3
1895 Male, age 76, right hemisphere 122.4
1995 Male, age 72, unknown 108.5
1839 Male, age 51, unknown 88.6
2668 Female, age 75, unknown 86.0
2587 Male, age 74, left hemisphere 85.0
1913 Female, age 42, unknown 80.4
1796 Male, age 53, unknown 77.0
2664 Male, age 75, both hemispheres 74.3
2261 Male, age 18, unknown 70.5
2087 Female, age 72, unknown 60.5
Ventral tegmental area
nTPM: 72.9
2410 Female, age 72, unknown 91.1
1915 Female, age 42, unknown 75.8
1942 Male, age 51, unknown 70.9
2223 Female, age 72, unknown 67.8
2218 Male, age 76, both hemispheres 66.8
2021 Male, age 53, unknown 64.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 79.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.1
Samples: 139

Max nTPM: 334.6
Min nTPM: 9.3
Std nTPM: 53.9
Median nTPM: 61.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 334.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 284.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 250.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 231.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 222.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 193.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 186.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 163.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 160.4
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 158.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 153.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.6
FF:10158-103A5 76 years, female 143.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 314.0
Pig sample Sample description nTPM
Midbrain
nTPM: 253.2
Samples: 4

Max nTPM: 421.5
Min nTPM: 164.2
Sample A Female 231.1
Sample B Female 421.5
Sample C Male 164.2
Sample D Male 196.0
Periaqueductal gray
nTPM: 255.5
Samples: 3

Max nTPM: 329.9
Min nTPM: 196.3
Sample B Female 329.9
Sample C Male 196.3
Sample D Male 240.4
Substantia nigra
nTPM: 314.0
Samples: 4

Max nTPM: 460.3
Min nTPM: 224.4
Sample A Female 317.5
Sample B Female 224.4
Sample C Male 253.7
Sample D Male 460.3
Superior colliculi
nTPM: 229.5
Samples: 4

Max nTPM: 298.8
Min nTPM: 105.7
Sample A Female 259.9
Sample B Female 105.7
Sample C Male 253.5
Sample D Male 298.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.1
Samples: 4

Max nTPM: 67.7
Min nTPM: 59.4
Sample A Male 67.7
Sample B Male 59.7
Sample C Female 59.4
Sample D Female 61.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
69116504 Antisense, RP_050317_02_G03, Mouse strain C57BL/6J (56 days, male) 3.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.