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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.5 nTPM
HPA:37.5 nTPM
GTEx:28.8 nTPM
FANTOM5:119.7 Scaled Tags Per Million
Pig:9.0 nTPM
Mouse:16.8 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.1
2586 Male, age 75, left hemisphere 37.8
2411 Female, age 72, unknown 36.0
1830 Male, age 51, unknown 35.9
1870 Female, age 42, unknown 34.6
2019 Male, age 18, unknown 31.8
2828 Female, age 72, unknown 31.8
1833 Male, age 53, unknown 31.7
2666 Male, age 74, left hemisphere 31.1
1827 Male, age 72, unknown 28.2
2219 Male, age 76, both hemispheres 22.4
Dorsal raphe nucleus
nTPM: 27.7
2750 Male, age 76, both hemispheres 41.8
2047 Male, age 72, unknown 27.2
1828 Male, age 53, unknown 23.8
2016 Female, age 72, unknown 23.6
2298 Female, age 72, unknown 22.3
Inferior colliculus
nTPM: 22.1
1848 Female, age 42, unknown 23.4
1890 Male, age 53, unknown 23.2
2849 Male, age 72, unknown 22.2
2097 Female, age 72, unknown 19.5
Median raphe nucleus
nTPM: 29.7
2220 Male, age 76, midline 29.7
Pedunculopontine tegmental nucleus
nTPM: 27.9
2334 Male, age 80, both hemispheres 31.7
1921 Female, age 85, both hemispheres 28.0
2338 Male, age 61, both hemispheres 24.0
Periaquaductal grey, anterior
nTPM: 28.9
1947 Male, age 18, unknown 31.7
1795 Male, age 51, unknown 28.4
2502 Female, age 75, unknown 26.6
Periaquaductal grey, dorsal
nTPM: 20.7
2464 Female, age 72, unknown 25.3
1831 Male, age 72, unknown 20.5
1840 Male, age 53, unknown 19.0
2850 Male, age 76, both hemispheres 18.2
Periaquaductal grey, lateral
nTPM: 23.6
2053 Male, age 18, unknown 27.5
2272 Male, age 74, both hemispheres 23.1
2140 Male, age 76, both hemispheres 20.2
Pretectal area
nTPM: 25.6
2316 Male, age 76, right hemisphere 31.5
2825 Male, age 18, unknown 29.6
2007 Male, age 72, unknown 29.4
1815 Male, age 53, unknown 27.3
2407 Male, age 75, both hemispheres 27.1
1944 Female, age 72, unknown 24.1
2224 Female, age 72, unknown 23.8
2273 Male, age 74, both hemispheres 22.7
1816 Male, age 51, unknown 22.5
1817 Female, age 42, unknown 22.1
2667 Female, age 75, unknown 21.4
Red nucleus
nTPM: 37.5
2584 Male, age 75, left hemisphere 42.2
1904 Male, age 53, unknown 40.5
2823 Male, age 76, right hemisphere 38.9
2588 Male, age 74, left hemisphere 38.6
1865 Male, age 51, unknown 38.5
2769 Male, age 72, unknown 38.4
2227 Male, age 72, unknown 37.9
2725 Female, age 75, unknown 37.0
2503 Female, age 72, unknown 35.7
1821 Female, age 72, unknown 35.1
1954 Female, age 42, unknown 34.6
2785 Male, age 18, unknown 32.6
Substantia nigra
nTPM: 28.4
2409 Female, age 72, unknown 44.5
2583 Male, age 75, right hemisphere 30.8
1851 Male, age 51, unknown 29.8
2590 Female, age 75, unknown 29.7
1941 Male, age 53, unknown 29.3
1889 Female, age 72, unknown 27.2
1916 Female, age 42, unknown 25.9
2241 Male, age 72, unknown 23.7
2699 Male, age 18, unknown 22.0
2665 Male, age 74, both hemispheres 21.2
Superior colliculus
nTPM: 28.9
1913 Female, age 42, unknown 38.3
2668 Female, age 75, unknown 34.7
1995 Male, age 72, unknown 30.9
1895 Male, age 76, right hemisphere 28.6
1796 Male, age 53, unknown 28.5
1839 Male, age 51, unknown 28.3
2261 Male, age 18, unknown 27.5
2587 Male, age 74, left hemisphere 27.5
2664 Male, age 75, both hemispheres 22.8
2087 Female, age 72, unknown 21.9
Ventral tegmental area
nTPM: 30.9
2223 Female, age 72, unknown 39.3
2410 Female, age 72, unknown 32.5
2021 Male, age 53, unknown 29.3
2218 Male, age 76, both hemispheres 28.7
1942 Male, age 51, unknown 28.6
1915 Female, age 42, unknown 27.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.8
Samples: 139

Max nTPM: 72.1
Min nTPM: 11.0
Std nTPM: 9.5
Median nTPM: 26.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 72.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 61.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 56.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 52.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 52.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 52.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 51.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 48.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 46.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 46.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 43.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.7
FF:10158-103A5 76 years, female 119.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.0
Pig sample Sample description nTPM
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 15.9
Min nTPM: 6.1
Sample A Female 15.9
Sample B Female 6.1
Sample C Male 8.1
Sample D Male 6.1
Periaqueductal gray
nTPM: 6.0
Samples: 3

Max nTPM: 7.3
Min nTPM: 5.4
Sample B Female 5.4
Sample C Male 7.3
Sample D Male 5.4
Substantia nigra
nTPM: 8.6
Samples: 4

Max nTPM: 11.3
Min nTPM: 5.9
Sample A Female 11.3
Sample B Female 7.9
Sample C Male 9.2
Sample D Male 5.9
Superior colliculi
nTPM: 6.7
Samples: 4

Max nTPM: 8.4
Min nTPM: 4.3
Sample A Female 8.4
Sample B Female 4.3
Sample C Male 7.2
Sample D Male 6.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.8
Samples: 4

Max nTPM: 18.1
Min nTPM: 14.4
Sample A Male 18.1
Sample B Male 14.4
Sample C Female 17.2
Sample D Female 17.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
1517 Antisense, RP_040420_01_C07, Mouse strain C57BL/6J (56 days, male) 1.0
1516 Antisense, RP_040420_01_C07, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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