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CDC42SE1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.2 nTPM
HPA:42.2 nTPM
GTEx:32.5 nTPM
FANTOM5:136.8 Scaled Tags Per Million
Pig:26.8 nTPM
Mouse:43.1 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.9
2019 Male, age 18, unknown 43.8
2666 Male, age 74, left hemisphere 42.2
1830 Male, age 51, unknown 41.3
1870 Female, age 42, unknown 41.3
2411 Female, age 72, unknown 41.3
2586 Male, age 75, left hemisphere 41.3
2828 Female, age 72, unknown 41.0
1833 Male, age 53, unknown 40.6
1827 Male, age 72, unknown 39.3
2219 Male, age 76, both hemispheres 36.6
Dorsal raphe nucleus
nTPM: 39.3
2750 Male, age 76, both hemispheres 41.5
2016 Female, age 72, unknown 39.6
1828 Male, age 53, unknown 39.1
2047 Male, age 72, unknown 38.3
2298 Female, age 72, unknown 38.1
Inferior colliculus
nTPM: 39.3
1890 Male, age 53, unknown 40.2
2097 Female, age 72, unknown 40.1
1848 Female, age 42, unknown 38.9
2849 Male, age 72, unknown 38.0
Median raphe nucleus
nTPM: 39.6
2220 Male, age 76, midline 39.6
Pedunculopontine tegmental nucleus
nTPM: 40.1
2338 Male, age 61, both hemispheres 42.7
2334 Male, age 80, both hemispheres 39.5
1921 Female, age 85, both hemispheres 38.1
Periaquaductal grey, anterior
nTPM: 40.0
1947 Male, age 18, unknown 41.0
2502 Female, age 75, unknown 39.7
1795 Male, age 51, unknown 39.3
Periaquaductal grey, dorsal
nTPM: 39.3
2464 Female, age 72, unknown 41.1
1831 Male, age 72, unknown 39.4
2850 Male, age 76, both hemispheres 39.2
1840 Male, age 53, unknown 37.4
Periaquaductal grey, lateral
nTPM: 39.6
2140 Male, age 76, both hemispheres 40.9
2053 Male, age 18, unknown 39.0
2272 Male, age 74, both hemispheres 39.0
Pretectal area
nTPM: 40.3
2316 Male, age 76, right hemisphere 42.3
1815 Male, age 53, unknown 42.2
1817 Female, age 42, unknown 41.5
2007 Male, age 72, unknown 41.5
2407 Male, age 75, both hemispheres 40.8
1816 Male, age 51, unknown 40.3
1944 Female, age 72, unknown 40.0
2667 Female, age 75, unknown 39.1
2224 Female, age 72, unknown 38.7
2825 Male, age 18, unknown 38.4
2273 Male, age 74, both hemispheres 38.2
Red nucleus
nTPM: 42.2
1904 Male, age 53, unknown 43.9
1865 Male, age 51, unknown 43.8
2227 Male, age 72, unknown 43.2
2785 Male, age 18, unknown 42.5
2769 Male, age 72, unknown 42.2
2584 Male, age 75, left hemisphere 42.1
1954 Female, age 42, unknown 41.9
2503 Female, age 72, unknown 41.8
2823 Male, age 76, right hemisphere 41.7
1821 Female, age 72, unknown 41.6
2725 Female, age 75, unknown 41.2
2588 Male, age 74, left hemisphere 40.4
Substantia nigra
nTPM: 40.6
2583 Male, age 75, right hemisphere 42.5
2590 Female, age 75, unknown 41.7
2241 Male, age 72, unknown 41.5
2409 Female, age 72, unknown 41.5
1851 Male, age 51, unknown 40.7
2665 Male, age 74, both hemispheres 40.2
1941 Male, age 53, unknown 40.0
1889 Female, age 72, unknown 39.9
1916 Female, age 42, unknown 39.3
2699 Male, age 18, unknown 38.7
Superior colliculus
nTPM: 40.6
1913 Female, age 42, unknown 42.8
2668 Female, age 75, unknown 41.8
1995 Male, age 72, unknown 41.5
2261 Male, age 18, unknown 41.2
2087 Female, age 72, unknown 40.3
2587 Male, age 74, left hemisphere 40.3
1839 Male, age 51, unknown 39.6
1895 Male, age 76, right hemisphere 39.6
2664 Male, age 75, both hemispheres 39.5
1796 Male, age 53, unknown 39.3
Ventral tegmental area
nTPM: 40.1
2410 Female, age 72, unknown 40.9
2223 Female, age 72, unknown 40.5
2021 Male, age 53, unknown 40.1
2218 Male, age 76, both hemispheres 40.1
1942 Male, age 51, unknown 39.5
1915 Female, age 42, unknown 39.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.5
Samples: 139

Max nTPM: 55.9
Min nTPM: 15.3
Std nTPM: 8.0
Median nTPM: 31.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 55.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 55.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 51.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 51.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 50.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 49.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 48.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 47.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 47.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 45.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 136.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 136.8
FF:10158-103A5 76 years, female 136.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.8
Pig sample Sample description nTPM
Midbrain
nTPM: 24.9
Samples: 4

Max nTPM: 33.5
Min nTPM: 19.3
Sample A Female 33.5
Sample B Female 25.7
Sample C Male 21.0
Sample D Male 19.3
Periaqueductal gray
nTPM: 22.3
Samples: 3

Max nTPM: 24.0
Min nTPM: 19.4
Sample B Female 23.5
Sample C Male 24.0
Sample D Male 19.4
Substantia nigra
nTPM: 26.8
Samples: 4

Max nTPM: 28.6
Min nTPM: 24.5
Sample A Female 27.9
Sample B Female 26.1
Sample C Male 24.5
Sample D Male 28.6
Superior colliculi
nTPM: 25.6
Samples: 4

Max nTPM: 29.6
Min nTPM: 21.3
Sample A Female 29.6
Sample B Female 21.3
Sample C Male 25.8
Sample D Male 25.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.1
Samples: 4

Max nTPM: 45.3
Min nTPM: 38.6
Sample A Male 44.6
Sample B Male 38.6
Sample C Female 43.9
Sample D Female 45.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69116877 Antisense, RP_050321_01_D01, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.