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TAF13
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.5 nTPM
HPA:24.5 nTPM
GTEx:25.6 nTPM
FANTOM5:135.6 Scaled Tags Per Million
Pig:25.6 nTPM
Mouse:5.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.1
2019 Male, age 18, unknown 28.0
2411 Female, age 72, unknown 25.5
2666 Male, age 74, left hemisphere 25.4
2586 Male, age 75, left hemisphere 23.4
1870 Female, age 42, unknown 22.8
1827 Male, age 72, unknown 22.5
1833 Male, age 53, unknown 22.1
1830 Male, age 51, unknown 21.4
2219 Male, age 76, both hemispheres 20.7
2828 Female, age 72, unknown 19.4
Dorsal raphe nucleus
nTPM: 21.4
1828 Male, age 53, unknown 23.8
2750 Male, age 76, both hemispheres 23.0
2047 Male, age 72, unknown 21.1
2016 Female, age 72, unknown 19.8
2298 Female, age 72, unknown 19.3
Inferior colliculus
nTPM: 21.5
1890 Male, age 53, unknown 22.9
2097 Female, age 72, unknown 22.5
1848 Female, age 42, unknown 21.3
2849 Male, age 72, unknown 19.4
Median raphe nucleus
nTPM: 23.9
2220 Male, age 76, midline 23.9
Pedunculopontine tegmental nucleus
nTPM: 22.1
2334 Male, age 80, both hemispheres 26.7
1921 Female, age 85, both hemispheres 20.3
2338 Male, age 61, both hemispheres 19.4
Periaquaductal grey, anterior
nTPM: 21.3
2502 Female, age 75, unknown 23.2
1947 Male, age 18, unknown 21.1
1795 Male, age 51, unknown 19.6
Periaquaductal grey, dorsal
nTPM: 20.3
2464 Female, age 72, unknown 22.9
1831 Male, age 72, unknown 20.1
2850 Male, age 76, both hemispheres 20.1
1840 Male, age 53, unknown 17.9
Periaquaductal grey, lateral
nTPM: 16.9
2053 Male, age 18, unknown 18.3
2140 Male, age 76, both hemispheres 16.7
2272 Male, age 74, both hemispheres 15.7
Pretectal area
nTPM: 22.1
2007 Male, age 72, unknown 28.1
1817 Female, age 42, unknown 27.4
1944 Female, age 72, unknown 27.4
1816 Male, age 51, unknown 25.9
1815 Male, age 53, unknown 25.0
2407 Male, age 75, both hemispheres 19.5
2667 Female, age 75, unknown 19.2
2224 Female, age 72, unknown 18.9
2825 Male, age 18, unknown 18.3
2316 Male, age 76, right hemisphere 16.9
2273 Male, age 74, both hemispheres 16.3
Red nucleus
nTPM: 24.1
1821 Female, age 72, unknown 27.3
2503 Female, age 72, unknown 26.3
2588 Male, age 74, left hemisphere 25.8
2725 Female, age 75, unknown 24.7
1904 Male, age 53, unknown 24.1
2785 Male, age 18, unknown 24.1
1954 Female, age 42, unknown 23.9
1865 Male, age 51, unknown 23.5
2823 Male, age 76, right hemisphere 22.9
2769 Male, age 72, unknown 22.7
2584 Male, age 75, left hemisphere 22.2
2227 Male, age 72, unknown 21.9
Substantia nigra
nTPM: 24.5
1889 Female, age 72, unknown 27.4
2241 Male, age 72, unknown 26.2
1916 Female, age 42, unknown 25.9
2409 Female, age 72, unknown 25.1
1941 Male, age 53, unknown 24.7
1851 Male, age 51, unknown 24.6
2583 Male, age 75, right hemisphere 23.1
2699 Male, age 18, unknown 23.0
2590 Female, age 75, unknown 22.8
2665 Male, age 74, both hemispheres 22.6
Superior colliculus
nTPM: 21.5
2668 Female, age 75, unknown 23.2
2087 Female, age 72, unknown 23.0
2587 Male, age 74, left hemisphere 22.4
1839 Male, age 51, unknown 21.5
1895 Male, age 76, right hemisphere 21.5
2664 Male, age 75, both hemispheres 21.3
1913 Female, age 42, unknown 21.0
1995 Male, age 72, unknown 20.7
2261 Male, age 18, unknown 20.6
1796 Male, age 53, unknown 19.9
Ventral tegmental area
nTPM: 23.0
2410 Female, age 72, unknown 24.3
2218 Male, age 76, both hemispheres 23.7
2223 Female, age 72, unknown 23.2
1915 Female, age 42, unknown 23.1
1942 Male, age 51, unknown 22.6
2021 Male, age 53, unknown 20.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.6
Samples: 139

Max nTPM: 92.6
Min nTPM: 10.0
Std nTPM: 9.2
Median nTPM: 24.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 92.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 42.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 41.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 41.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 40.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 38.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 38.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 37.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 36.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 135.6
FF:10158-103A5 76 years, female 135.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 25.6
Pig sample Sample description nTPM
Midbrain
nTPM: 25.6
Samples: 4

Max nTPM: 31.4
Min nTPM: 18.7
Sample A Female 18.7
Sample B Female 27.1
Sample C Male 31.4
Sample D Male 25.3
Periaqueductal gray
nTPM: 23.7
Samples: 3

Max nTPM: 27.6
Min nTPM: 20.8
Sample B Female 22.8
Sample C Male 27.6
Sample D Male 20.8
Substantia nigra
nTPM: 25.0
Samples: 4

Max nTPM: 33.0
Min nTPM: 13.9
Sample A Female 32.9
Sample B Female 20.3
Sample C Male 33.0
Sample D Male 13.9
Superior colliculi
nTPM: 23.8
Samples: 4

Max nTPM: 27.8
Min nTPM: 16.9
Sample A Female 27.3
Sample B Female 16.9
Sample C Male 27.8
Sample D Male 23.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 5.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.2
Samples: 4

Max nTPM: 5.7
Min nTPM: 5.0
Sample A Male 5.0
Sample B Male 5.0
Sample C Female 5.0
Sample D Female 5.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
2655 Antisense, RP_040507_02_F03, Mouse strain C57BL/6J (56 days, male) 0.5
2656 Antisense, RP_040507_02_F03, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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