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CACNA1E
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.5 nTPM
HPA:30.5 nTPM
GTEx:16.9 nTPM
FANTOM5:60.1 Scaled Tags Per Million
Pig:44.0 nTPM
Mouse:25.5 nTPM
Allen mouse:14.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 30.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 18.5
2290 Female, age 72, unknown 35.7
1854 Male, age 80, left hemisphere 25.6
1857 Female, age 85, left hemisphere 24.7
2846 Female, age 79, unknown 20.9
2289 Male, age 61, right hemisphere 19.8
1781 Male, age 74, unknown 13.8
2288 Male, age 75, left hemisphere 7.8
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 30.5
2568 Male, age 61, both hemispheres 48.5
2284 Female, age 91, both hemispheres 47.3
2645 Female, age 72, unknown 39.2
2198 Male, age 80, both hemispheres 37.5
2491 Male, age 75, both hemispheres 30.2
2392 Female, age 94, both hemispheres 25.2
2196 Female, age 79, unknown 18.1
1956 Male, age 74, unknown 15.6
2292 Female, age 85, both hemispheres 13.3
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 26.2
1856 Female, age 91, right hemisphere 70.9
2824 Male, age 61, right hemisphere 53.2
1783 Male, age 74, unknown 32.1
1806 Female, age 85, left hemisphere 22.1
2698 Female, age 72, unknown 21.3
2286 Male, age 75, left hemisphere 6.9
2732 Male, age 80, right hemisphere 3.0
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 5.8
2393 Male, age 80, right hemisphere 16.7
2484 Female, age 94, left hemisphere 6.5
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 24.7
2195 Female, age 85, both hemispheres 40.9
2775 Male, age 80, right hemisphere 25.9
2029 Male, age 61, right hemisphere 22.0
1812 Female, age 91, both hemispheres 19.7
1979 Male, age 74, unknown 14.9
Olfactory tubercle
nTPM: 29.3
1998 Female, age 91, both hemispheres 40.2
2487 Female, age 94, left hemisphere 37.3
1846 Male, age 80, right hemisphere 22.6
2856 Male, age 75, right hemisphere 17.0
Putamen
nTPM: 26.0
1838 Male, age 80, right hemisphere 47.4
1937 Female, age 91, right hemisphere 45.1
2489 Female, age 72, unknown 28.2
2466 Female, age 79, unknown 26.9
1829 Male, age 74, unknown 23.2
2647 Male, age 75, left hemisphere 11.2
2482 Female, age 94, left hemisphere 0.0
Septal nuclei
nTPM: 22.7
1960 Male, age 74, unknown 59.5
2059 Female, age 85, both hemispheres 30.4
2009 Female, age 91, both hemispheres 28.3
2629 Female, age 94, right hemisphere 21.8
2031 Female, age 72, unknown 17.5
2394 Male, age 61, left hemisphere 1.4
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.6
Samples: 246

Max nTPM: 29.0
Min nTPM: 0.7
Std nTPM: 5.9
Median nTPM: 10.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 29.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 24.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 24.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 24.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 23.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 22.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 22.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 22.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 21.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 21.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 21.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.9
Samples: 246

Max nTPM: 41.5
Min nTPM: 0.2
Std nTPM: 9.1
Median nTPM: 17.8
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 41.5
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 39.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 39.0
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 36.1
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 35.9
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 34.8
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 34.4
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 34.4
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 32.3
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 32.2
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 32.0
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Brain - Putamen (basal ganglia)
Average nTPM: 9.5
Samples: 205

Max nTPM: 23.8
Min nTPM: 0.3
Std nTPM: 5.8
Median nTPM: 9.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 23.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 23.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 22.7
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 22.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 22.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 21.7
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 21.5
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 20.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 20.4
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 20.4
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 19.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 49.4
FF:10164-103B2 76 years, female 49.4
Globus pallidus
Scaled Tags Per Million: 12.6
FF:10175-103C4 60 years, female 18.9
FF:10161-103A8 76 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 42.8
FF:10037-101F1 23-56 years, mixed 42.8
Putamen
Scaled Tags Per Million: 60.1
FF:10176-103C5 60 years, female 60.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 44.0
Pig sample Sample description nTPM
Caudate
nTPM: 44.0
Samples: 4

Max nTPM: 49.5
Min nTPM: 30.0
Sample A Female 30.0
Sample B Female 48.1
Sample C Male 49.5
Sample D Male 48.5
Putamen
nTPM: 39.6
Samples: 4

Max nTPM: 50.6
Min nTPM: 13.9
Sample A Female 13.9
Sample B Female 47.5
Sample C Male 46.4
Sample D Male 50.6
Septum
nTPM: 24.7
Samples: 4

Max nTPM: 32.7
Min nTPM: 16.2
Sample A Female 29.5
Sample B Female 32.7
Sample C Male 16.2
Sample D Male 20.4
Ventral pallidum
nTPM: 31.4
Samples: 4

Max nTPM: 42.3
Min nTPM: 17.6
Sample A Female 42.3
Sample B Female 30.9
Sample C Male 17.6
Sample D Male 34.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 25.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 25.5
Samples: 4

Max nTPM: 27.7
Min nTPM: 22.7
Sample A Male 22.7
Sample B Male 26.0
Sample C Female 27.7
Sample D Female 25.5
Septum
nTPM: 18.0
Samples: 4

Max nTPM: 19.5
Min nTPM: 15.3
Sample A Male 19.5
Sample B Male 18.2
Sample C Female 15.3
Sample D Female 18.8
Ventral forebrain
nTPM: 20.7
Samples: 4

Max nTPM: 24.0
Min nTPM: 16.2
Sample A Male 22.1
Sample B Male 20.4
Sample C Female 16.2
Sample D Female 24.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 14.9
69236897 Antisense, RP_050331_01_D09, Mouse strain C57BL/6J (56 days, male) 15.5
74988669 Antisense, RP_060315_04_A04, Mouse strain C57BL/6J (56 days, male) 14.3
Pallidum
Expression energy: 9.2
69236897 Antisense, RP_050331_01_D09, Mouse strain C57BL/6J (56 days, male) 11.6
74988669 Antisense, RP_060315_04_A04, Mouse strain C57BL/6J (56 days, male) 6.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.