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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:70.3 nTPM
HPA:70.3 nTPM
GTEx:57.6 nTPM
FANTOM5:123.4 Scaled Tags Per Million
Pig:70.1 nTPM
Mouse:71.3 nTPM
Allen mouse:4.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.6
1827 Male, age 72, unknown 65.0
1870 Female, age 42, unknown 64.9
2586 Male, age 75, left hemisphere 63.8
2019 Male, age 18, unknown 63.7
2411 Female, age 72, unknown 63.6
2666 Male, age 74, left hemisphere 62.7
2219 Male, age 76, both hemispheres 62.6
1830 Male, age 51, unknown 61.0
1833 Male, age 53, unknown 59.8
2828 Female, age 72, unknown 59.1
Dorsal raphe nucleus
nTPM: 61.6
2047 Male, age 72, unknown 66.5
1828 Male, age 53, unknown 66.0
2016 Female, age 72, unknown 59.0
2298 Female, age 72, unknown 59.0
2750 Male, age 76, both hemispheres 57.7
Inferior colliculus
nTPM: 66.1
2097 Female, age 72, unknown 69.3
1848 Female, age 42, unknown 66.5
1890 Male, age 53, unknown 65.3
2849 Male, age 72, unknown 63.3
Median raphe nucleus
nTPM: 60.5
2220 Male, age 76, midline 60.5
Pedunculopontine tegmental nucleus
nTPM: 64.6
1921 Female, age 85, both hemispheres 67.1
2338 Male, age 61, both hemispheres 67.1
2334 Male, age 80, both hemispheres 59.8
Periaquaductal grey, anterior
nTPM: 63.2
1947 Male, age 18, unknown 67.8
2502 Female, age 75, unknown 61.0
1795 Male, age 51, unknown 60.8
Periaquaductal grey, dorsal
nTPM: 63.8
1840 Male, age 53, unknown 66.9
1831 Male, age 72, unknown 66.0
2850 Male, age 76, both hemispheres 62.1
2464 Female, age 72, unknown 60.1
Periaquaductal grey, lateral
nTPM: 60.3
2140 Male, age 76, both hemispheres 62.9
2053 Male, age 18, unknown 62.4
2272 Male, age 74, both hemispheres 55.8
Pretectal area
nTPM: 67.0
1816 Male, age 51, unknown 76.2
1944 Female, age 72, unknown 72.8
2667 Female, age 75, unknown 70.9
1817 Female, age 42, unknown 68.3
2007 Male, age 72, unknown 67.4
2407 Male, age 75, both hemispheres 66.8
1815 Male, age 53, unknown 65.4
2825 Male, age 18, unknown 63.3
2273 Male, age 74, both hemispheres 62.4
2224 Female, age 72, unknown 61.9
2316 Male, age 76, right hemisphere 61.1
Red nucleus
nTPM: 61.1
2503 Female, age 72, unknown 65.2
2725 Female, age 75, unknown 64.5
1821 Female, age 72, unknown 63.7
2823 Male, age 76, right hemisphere 62.7
2584 Male, age 75, left hemisphere 62.5
2588 Male, age 74, left hemisphere 61.0
1865 Male, age 51, unknown 60.8
1954 Female, age 42, unknown 60.6
2785 Male, age 18, unknown 60.1
2769 Male, age 72, unknown 58.5
2227 Male, age 72, unknown 58.2
1904 Male, age 53, unknown 55.6
Substantia nigra
nTPM: 70.3
1941 Male, age 53, unknown 76.4
2241 Male, age 72, unknown 74.5
2665 Male, age 74, both hemispheres 74.1
2409 Female, age 72, unknown 69.4
1916 Female, age 42, unknown 69.0
1889 Female, age 72, unknown 68.9
2699 Male, age 18, unknown 68.3
2583 Male, age 75, right hemisphere 68.1
1851 Male, age 51, unknown 67.8
2590 Female, age 75, unknown 66.2
Superior colliculus
nTPM: 64.1
2664 Male, age 75, both hemispheres 72.9
2087 Female, age 72, unknown 69.5
1796 Male, age 53, unknown 65.1
1895 Male, age 76, right hemisphere 64.6
2587 Male, age 74, left hemisphere 64.1
2668 Female, age 75, unknown 62.5
2261 Male, age 18, unknown 62.3
1839 Male, age 51, unknown 61.2
1913 Female, age 42, unknown 60.0
1995 Male, age 72, unknown 58.7
Ventral tegmental area
nTPM: 65.6
1915 Female, age 42, unknown 69.4
2223 Female, age 72, unknown 68.0
1942 Male, age 51, unknown 66.6
2218 Male, age 76, both hemispheres 65.0
2021 Male, age 53, unknown 62.6
2410 Female, age 72, unknown 62.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 57.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 57.6
Samples: 139

Max nTPM: 139.7
Min nTPM: 35.1
Std nTPM: 14.2
Median nTPM: 54.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 139.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 125.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 96.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 89.0
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 83.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 83.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 80.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 79.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 78.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 78.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 77.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 123.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.4
FF:10158-103A5 76 years, female 123.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.1
Pig sample Sample description nTPM
Midbrain
nTPM: 66.8
Samples: 4

Max nTPM: 75.3
Min nTPM: 60.1
Sample A Female 60.8
Sample B Female 75.3
Sample C Male 60.1
Sample D Male 70.9
Periaqueductal gray
nTPM: 66.8
Samples: 3

Max nTPM: 73.6
Min nTPM: 59.0
Sample B Female 67.9
Sample C Male 73.6
Sample D Male 59.0
Substantia nigra
nTPM: 70.1
Samples: 4

Max nTPM: 85.6
Min nTPM: 49.2
Sample A Female 81.4
Sample B Female 64.2
Sample C Male 85.6
Sample D Male 49.2
Superior colliculi
nTPM: 61.9
Samples: 4

Max nTPM: 68.1
Min nTPM: 57.2
Sample A Female 68.1
Sample B Female 57.2
Sample C Male 62.0
Sample D Male 60.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.3
Samples: 4

Max nTPM: 76.6
Min nTPM: 63.8
Sample A Male 63.8
Sample B Male 73.4
Sample C Female 76.6
Sample D Female 71.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.3
74821970 Antisense, RP_060321_02_F08, Mouse strain C57BL/6J (56 days, male) 4.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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