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TCAF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:29.4 nTPM
HPA:29.4 nTPM
GTEx:26.3 nTPM
FANTOM5:65.3 Scaled Tags Per Million
Pig:96.0 nTPM
Mouse:111.9 nTPM
Allen mouse:14.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA011732
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.4
Sample id Sample description nTPM
Hippocampus
nTPM: 21.3
2148 Female, age 91, left hemisphere 30.7
1898 Male, age 80, left hemisphere 26.7
2621 Female, age 67, right hemisphere 24.8
1855 Male, age 76, left hemisphere 18.8
1911 Female, age 85, right hemisphere 15.4
2529 Female, age 94, left hemisphere 11.4
Dentate gyrus
nTPM: 26.1
1927 Female, age 91, both hemispheres 38.6
2531 Female, age 67, both hemispheres 36.9
2010 Male, age 76, both hemispheres 25.4
2528 Male, age 74, both hemispheres 20.7
2246 Female, age 85, both hemispheres 20.2
2530 Female, age 94, left hemisphere 14.8
Entorhinal gyrus
nTPM: 16.0
2686 Male, age 75, right hemisphere 20.3
2764 Male, age 80, right hemisphere 20.1
1787 Male, age 76, left hemisphere 15.8
1938 Female, age 85, left hemisphere 15.6
2613 Female, age 94, left hemisphere 14.5
2117 Female, age 91, right hemisphere 9.7
Hippocampus, CA1
nTPM: 29.4
2749 Male, age 80, left hemisphere 41.9
2045 Male, age 76, both hemispheres 37.5
1873 Female, age 85, both hemispheres 33.1
2082 Female, age 91, right hemisphere 18.6
2527 Male, age 74, both hemispheres 16.0
Hippocampus, CA2
nTPM: 17.5
1892 Male, age 76, both hemispheres 32.0
1963 Male, age 80, left hemisphere 30.1
2437 Female, age 94, left hemisphere 13.8
2249 Male, age 74, both hemispheres 10.7
2113 Female, age 91, right hemisphere 9.8
1940 Female, age 85, left hemisphere 8.6
Hippocampus, CA3
nTPM: 28.1
2620 Female, age 94, left hemisphere 54.9
2861 Female, age 67, both hemispheres 34.4
2137 Male, age 80, left hemisphere 27.6
1867 Male, age 76, both hemispheres 23.3
1891 Female, age 85, both hemispheres 17.3
2436 Male, age 74, both hemispheres 10.9
Parahippocampal cortex
nTPM: 15.9
2693 Female, age 94, both hemispheres 23.0
1850 Male, age 80, both hemispheres 20.5
1933 Female, age 85, both hemispheres 18.8
2250 Female, age 67, right hemisphere 18.7
1990 Female, age 91, right hemisphere 16.4
2622 Female, age 67, right hemisphere 14.8
2245 Female, age 91, both hemispheres 14.5
2532 Female, age 72, left hemisphere 13.1
2692 Male, age 74, both hemispheres 10.4
2018 Male, age 76, both hemispheres 8.8
Perirhinal gyrus
nTPM: 23.6
2521 Female, age 94, right hemisphere 28.8
1847 Female, age 91, left hemisphere 27.1
1794 Male, age 80, right hemisphere 25.7
1841 Female, age 85, right hemisphere 20.5
2848 Male, age 76, right hemisphere 16.1
Subiculum
nTPM: 13.7
2729 Female, age 91, right hemisphere 20.4
1977 Female, age 85, both hemispheres 18.5
1901 Male, age 80, both hemispheres 14.1
2619 Male, age 74, both hemispheres 13.1
2438 Female, age 94, left hemisphere 10.5
2042 Male, age 76, both hemispheres 5.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.3
Samples: 197

Max nTPM: 65.6
Min nTPM: 9.8
Std nTPM: 11.3
Median nTPM: 22.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 65.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 61.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 60.2
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 59.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 58.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 54.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 49.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 48.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 48.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 47.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 46.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 65.3
FF:10169-103B7 60 years, female 68.0
FF:10153-102I9 76 years, female 62.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 96.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 95.8
Samples: 4

Max nTPM: 110.6
Min nTPM: 80.6
Sample A Female 110.6
Sample B Female 104.4
Sample C Male 87.6
Sample D Male 80.6
Entorhinal cortex
nTPM: 93.6
Samples: 4

Max nTPM: 103.3
Min nTPM: 86.1
Sample A Female 93.1
Sample B Female 86.1
Sample C Male 103.3
Sample D Male 92.0
Subiculum
nTPM: 95.3
Samples: 4

Max nTPM: 122.2
Min nTPM: 78.0
Sample A Female 122.2
Sample B Female 85.2
Sample C Male 95.6
Sample D Male 78.0
Ventral hippocampus
nTPM: 96.1
Samples: 4

Max nTPM: 117.0
Min nTPM: 74.2
Sample A Female 97.9
Sample B Female 74.2
Sample C Male 117.0
Sample D Male 95.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 111.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 111.9
Samples: 4

Max nTPM: 127.3
Min nTPM: 101.6
Sample A Male 101.6
Sample B Male 108.4
Sample C Female 110.2
Sample D Female 127.3
Hippocampal formation
nTPM: 111.7
Samples: 4

Max nTPM: 121.7
Min nTPM: 103.8
Sample A Male 104.4
Sample B Male 121.7
Sample C Female 116.9
Sample D Female 103.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.0
68633107 Antisense, RP_050125_02_D08, Mouse strain C57BL/6J (56 days, male) 18.1
71211695 Antisense, RP_050816_02_B09, Mouse strain C57BL/6J (56 days, male) 10.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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