ABOUTMENU
HELP
NEWS
COPS8
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.4 nTPM
HPA:59.4 nTPM
GTEx:62.4 nTPM
FANTOM5:52.9 Scaled Tags Per Million
Pig:67.6 nTPM
Mouse:94.0 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.4
1827 Male, age 72, unknown 56.6
2019 Male, age 18, unknown 56.2
2411 Female, age 72, unknown 55.7
1870 Female, age 42, unknown 52.6
2828 Female, age 72, unknown 51.9
1833 Male, age 53, unknown 51.4
2219 Male, age 76, both hemispheres 51.1
2586 Male, age 75, left hemisphere 49.7
1830 Male, age 51, unknown 49.6
2666 Male, age 74, left hemisphere 49.1
Dorsal raphe nucleus
nTPM: 56.9
2298 Female, age 72, unknown 64.8
1828 Male, age 53, unknown 57.6
2047 Male, age 72, unknown 57.2
2750 Male, age 76, both hemispheres 54.1
2016 Female, age 72, unknown 50.8
Inferior colliculus
nTPM: 55.4
2097 Female, age 72, unknown 61.9
1848 Female, age 42, unknown 54.7
1890 Male, age 53, unknown 53.4
2849 Male, age 72, unknown 51.6
Median raphe nucleus
nTPM: 59.2
2220 Male, age 76, midline 59.2
Pedunculopontine tegmental nucleus
nTPM: 54.6
1921 Female, age 85, both hemispheres 58.5
2334 Male, age 80, both hemispheres 58.5
2338 Male, age 61, both hemispheres 46.9
Periaquaductal grey, anterior
nTPM: 54.9
1795 Male, age 51, unknown 56.3
2502 Female, age 75, unknown 54.8
1947 Male, age 18, unknown 53.7
Periaquaductal grey, dorsal
nTPM: 53.4
2850 Male, age 76, both hemispheres 56.8
1840 Male, age 53, unknown 53.4
2464 Female, age 72, unknown 51.9
1831 Male, age 72, unknown 51.3
Periaquaductal grey, lateral
nTPM: 55.7
2272 Male, age 74, both hemispheres 60.5
2053 Male, age 18, unknown 53.8
2140 Male, age 76, both hemispheres 52.9
Pretectal area
nTPM: 59.4
1817 Female, age 42, unknown 65.1
1944 Female, age 72, unknown 64.9
1816 Male, age 51, unknown 64.8
2273 Male, age 74, both hemispheres 64.7
2007 Male, age 72, unknown 62.3
2224 Female, age 72, unknown 62.3
1815 Male, age 53, unknown 60.5
2667 Female, age 75, unknown 57.3
2825 Male, age 18, unknown 52.2
2316 Male, age 76, right hemisphere 50.7
2407 Male, age 75, both hemispheres 48.5
Red nucleus
nTPM: 53.4
1821 Female, age 72, unknown 61.5
2725 Female, age 75, unknown 57.0
2785 Male, age 18, unknown 55.4
1954 Female, age 42, unknown 54.0
1904 Male, age 53, unknown 53.6
2769 Male, age 72, unknown 53.4
2227 Male, age 72, unknown 53.2
1865 Male, age 51, unknown 53.0
2503 Female, age 72, unknown 52.4
2823 Male, age 76, right hemisphere 52.2
2588 Male, age 74, left hemisphere 47.7
2584 Male, age 75, left hemisphere 47.4
Substantia nigra
nTPM: 57.1
1916 Female, age 42, unknown 65.8
1889 Female, age 72, unknown 63.4
1851 Male, age 51, unknown 60.8
1941 Male, age 53, unknown 58.5
2409 Female, age 72, unknown 58.4
2241 Male, age 72, unknown 57.6
2699 Male, age 18, unknown 54.0
2590 Female, age 75, unknown 53.3
2665 Male, age 74, both hemispheres 50.6
2583 Male, age 75, right hemisphere 49.0
Superior colliculus
nTPM: 53.7
2087 Female, age 72, unknown 60.0
2261 Male, age 18, unknown 59.5
2587 Male, age 74, left hemisphere 55.1
1796 Male, age 53, unknown 54.6
2668 Female, age 75, unknown 54.4
1895 Male, age 76, right hemisphere 53.4
1913 Female, age 42, unknown 51.6
1839 Male, age 51, unknown 51.4
1995 Male, age 72, unknown 50.6
2664 Male, age 75, both hemispheres 46.8
Ventral tegmental area
nTPM: 58.5
2410 Female, age 72, unknown 66.1
2218 Male, age 76, both hemispheres 62.6
1915 Female, age 42, unknown 59.1
2223 Female, age 72, unknown 54.7
2021 Male, age 53, unknown 54.6
1942 Male, age 51, unknown 53.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.4
Samples: 139

Max nTPM: 115.5
Min nTPM: 26.8
Std nTPM: 15.6
Median nTPM: 59.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 115.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 110.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 105.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 100.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 100.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 97.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 97.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 96.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 95.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 84.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 83.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 52.9
FF:10158-103A5 76 years, female 52.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 67.6
Pig sample Sample description nTPM
Midbrain
nTPM: 61.0
Samples: 4

Max nTPM: 75.0
Min nTPM: 48.3
Sample A Female 52.7
Sample B Female 48.3
Sample C Male 75.0
Sample D Male 67.8
Periaqueductal gray
nTPM: 51.7
Samples: 3

Max nTPM: 62.2
Min nTPM: 45.5
Sample B Female 47.5
Sample C Male 62.2
Sample D Male 45.5
Substantia nigra
nTPM: 60.0
Samples: 4

Max nTPM: 84.5
Min nTPM: 36.0
Sample A Female 84.5
Sample B Female 48.3
Sample C Male 71.0
Sample D Male 36.0
Superior colliculi
nTPM: 67.6
Samples: 4

Max nTPM: 81.0
Min nTPM: 49.8
Sample A Female 81.0
Sample B Female 49.8
Sample C Male 80.2
Sample D Male 59.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 94.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.0
Samples: 4

Max nTPM: 98.6
Min nTPM: 86.6
Sample A Male 94.1
Sample B Male 96.7
Sample C Female 86.6
Sample D Female 98.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
67765696 Antisense, RP_040916_01_C09, Mouse strain C57BL/6J (56 days, male) 2.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.