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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:12.1 nTPM
HPA:12.1 nTPM
GTEx:13.4 nTPM
FANTOM5:110.5 Scaled Tags Per Million
Mouse:84.6 nTPM
Allen mouse:12.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003047
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.1
Sample id Sample description nTPM
Hippocampus
nTPM: 3.5
1898 Male, age 80, left hemisphere 8.9
2621 Female, age 67, right hemisphere 5.8
2148 Female, age 91, left hemisphere 3.1
1855 Male, age 76, left hemisphere 2.6
1911 Female, age 85, right hemisphere 0.7
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 4.6
1927 Female, age 91, both hemispheres 11.7
2246 Female, age 85, both hemispheres 4.5
2531 Female, age 67, both hemispheres 4.0
2010 Male, age 76, both hemispheres 2.9
2530 Female, age 94, left hemisphere 2.9
2528 Male, age 74, both hemispheres 1.4
Entorhinal gyrus
nTPM: 5.0
2613 Female, age 94, left hemisphere 9.4
2764 Male, age 80, right hemisphere 8.7
1938 Female, age 85, left hemisphere 6.8
1787 Male, age 76, left hemisphere 5.3
2117 Female, age 91, right hemisphere 0.0
2686 Male, age 75, right hemisphere 0.0
Hippocampus, CA1
nTPM: 6.6
2749 Male, age 80, left hemisphere 15.4
1873 Female, age 85, both hemispheres 7.4
2082 Female, age 91, right hemisphere 3.8
2527 Male, age 74, both hemispheres 3.7
2045 Male, age 76, both hemispheres 3.0
Hippocampus, CA2
nTPM: 4.4
1892 Male, age 76, both hemispheres 8.2
1963 Male, age 80, left hemisphere 6.1
1940 Female, age 85, left hemisphere 4.1
2437 Female, age 94, left hemisphere 3.1
2249 Male, age 74, both hemispheres 2.5
2113 Female, age 91, right hemisphere 2.1
Hippocampus, CA3
nTPM: 5.8
2620 Female, age 94, left hemisphere 15.5
2137 Male, age 80, left hemisphere 9.2
2861 Female, age 67, both hemispheres 4.1
1867 Male, age 76, both hemispheres 2.7
2436 Male, age 74, both hemispheres 2.0
1891 Female, age 85, both hemispheres 1.3
Parahippocampal cortex
nTPM: 5.1
2245 Female, age 91, both hemispheres 8.9
1850 Male, age 80, both hemispheres 8.2
2250 Female, age 67, right hemisphere 8.0
1990 Female, age 91, right hemisphere 6.8
1933 Female, age 85, both hemispheres 6.5
2693 Female, age 94, both hemispheres 6.0
2532 Female, age 72, left hemisphere 3.8
2622 Female, age 67, right hemisphere 2.9
2018 Male, age 76, both hemispheres 0.3
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 12.1
1847 Female, age 91, left hemisphere 17.4
2521 Female, age 94, right hemisphere 14.3
1794 Male, age 80, right hemisphere 13.3
1841 Female, age 85, right hemisphere 10.4
2848 Male, age 76, right hemisphere 4.9
Subiculum
nTPM: 1.5
1977 Female, age 85, both hemispheres 5.9
1901 Male, age 80, both hemispheres 2.3
2619 Male, age 74, both hemispheres 1.0
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0
2729 Female, age 91, right hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.4
Samples: 197

Max nTPM: 44.3
Min nTPM: 1.7
Std nTPM: 8.9
Median nTPM: 11.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 44.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 40.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 36.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 33.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 32.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 32.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 30.6
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 30.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 29.8
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 29.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 28.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 110.5
FF:10169-103B7 60 years, female 163.2
FF:10153-102I9 76 years, female 57.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 84.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 84.7
Samples: 4

Max nTPM: 99.4
Min nTPM: 78.6
Sample A Male 81.9
Sample B Male 78.7
Sample C Female 78.6
Sample D Female 99.4
Hippocampal formation
nTPM: 81.8
Samples: 4

Max nTPM: 88.2
Min nTPM: 76.3
Sample A Male 77.0
Sample B Male 85.7
Sample C Female 88.2
Sample D Female 76.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 12.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 12.1
69262114 Antisense, RP_050224_01_A11, Mouse strain C57BL/6J (56 days, male) 12.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.