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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:100.9 nTPM
HPA:100.9 nTPM
GTEx:158.9 nTPM
FANTOM5:205.2 Scaled Tags Per Million
Pig:61.0 nTPM
Mouse:99.7 nTPM
Allen mouse:6.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA064621
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 100.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 98.3
2289 Male, age 61, right hemisphere 127.0
2290 Female, age 72, unknown 120.1
2288 Male, age 75, left hemisphere 109.5
1857 Female, age 85, left hemisphere 108.9
2846 Female, age 79, unknown 102.0
1854 Male, age 80, left hemisphere 90.6
1781 Male, age 74, unknown 66.6
2481 Female, age 94, left hemisphere 61.8
Claustrum
nTPM: 25.5
2196 Female, age 79, unknown 43.7
2568 Male, age 61, both hemispheres 33.8
2392 Female, age 94, both hemispheres 24.8
2284 Female, age 91, both hemispheres 23.1
2491 Male, age 75, both hemispheres 23.0
1956 Male, age 74, unknown 22.1
2198 Male, age 80, both hemispheres 21.3
2645 Female, age 72, unknown 20.5
2292 Female, age 85, both hemispheres 17.3
Globus pallidus, externus
nTPM: 21.4
2646 Male, age 61, right hemisphere 39.2
2395 Male, age 75, both hemispheres 21.4
2567 Female, age 72, unknown 18.7
2772 Female, age 79, unknown 15.4
1996 Male, age 80, right hemisphere 12.6
Globus pallidus, internus
nTPM: 18.1
2483 Female, age 94, right hemisphere 44.6
2566 Female, age 72, unknown 15.7
2287 Male, age 75, right hemisphere 15.5
2778 Female, age 91, both hemispheres 14.7
2111 Female, age 85, right hemisphere 14.4
2037 Male, age 80, right hemisphere 11.0
1818 Male, age 74, unknown 10.7
Nucleus accumbens
nTPM: 86.1
2824 Male, age 61, right hemisphere 125.5
1806 Female, age 85, left hemisphere 112.4
1783 Male, age 74, unknown 110.7
2286 Male, age 75, left hemisphere 98.2
1856 Female, age 91, right hemisphere 83.7
2698 Female, age 72, unknown 68.1
2732 Male, age 80, right hemisphere 48.3
2391 Female, age 94, left hemisphere 41.8
Nucleus basalis of Meynert
nTPM: 82.2
2484 Female, age 94, left hemisphere 111.3
2393 Male, age 80, right hemisphere 86.6
2569 Male, age 61, both hemispheres 67.9
2821 Male, age 75, both hemispheres 63.1
Nucleus of the diagonal band
nTPM: 38.2
2029 Male, age 61, right hemisphere 42.8
2195 Female, age 85, both hemispheres 41.7
1812 Female, age 91, both hemispheres 38.6
1979 Male, age 74, unknown 34.3
2775 Male, age 80, right hemisphere 33.4
Olfactory tubercle
nTPM: 29.2
2487 Female, age 94, left hemisphere 36.3
1846 Male, age 80, right hemisphere 31.3
2856 Male, age 75, right hemisphere 25.2
1998 Female, age 91, both hemispheres 24.0
Putamen
nTPM: 100.9
2647 Male, age 75, left hemisphere 130.0
2489 Female, age 72, unknown 115.7
2466 Female, age 79, unknown 109.4
1838 Male, age 80, right hemisphere 107.4
1829 Male, age 74, unknown 95.8
1937 Female, age 91, right hemisphere 80.2
2482 Female, age 94, left hemisphere 67.9
Septal nuclei
nTPM: 33.6
1960 Male, age 74, unknown 52.7
2059 Female, age 85, both hemispheres 47.1
2031 Female, age 72, unknown 36.5
2009 Female, age 91, both hemispheres 29.9
2394 Male, age 61, left hemisphere 28.7
2629 Female, age 94, right hemisphere 25.1
2199 Male, age 80, right hemisphere 15.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 158.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 107.7
Samples: 246

Max nTPM: 336.6
Min nTPM: 3.1
Std nTPM: 59.9
Median nTPM: 97.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 336.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 276.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 256.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 247.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 243.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 238.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 234.2
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 227.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 226.7
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 225.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 225.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 158.9
Samples: 246

Max nTPM: 370.5
Min nTPM: 5.3
Std nTPM: 79.2
Median nTPM: 166.5
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 370.5
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 361.4
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 358.2
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 330.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 329.4
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 318.1
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 317.0
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 309.4
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 305.7
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 301.6
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 296.6
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Brain - Putamen (basal ganglia)
Average nTPM: 109.4
Samples: 205

Max nTPM: 292.4
Min nTPM: 12.7
Std nTPM: 65.3
Median nTPM: 97.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 292.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 273.8
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 270.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 264.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 260.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 256.0
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 247.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 236.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 233.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 226.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 223.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 205.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 169.3
FF:10164-103B2 76 years, female 169.3
Globus pallidus
Scaled Tags Per Million: 36.1
FF:10175-103C4 60 years, female 37.8
FF:10161-103A8 76 years, female 34.5
Nucleus accumbens
Scaled Tags Per Million: 79.9
FF:10037-101F1 23-56 years, mixed 79.9
Putamen
Scaled Tags Per Million: 205.2
FF:10176-103C5 60 years, female 205.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 61.0
Pig sample Sample description nTPM
Caudate
nTPM: 61.0
Samples: 4

Max nTPM: 75.0
Min nTPM: 49.0
Sample A Female 49.0
Sample B Female 62.0
Sample C Male 75.0
Sample D Male 58.1
Putamen
nTPM: 48.1
Samples: 4

Max nTPM: 71.8
Min nTPM: 19.3
Sample A Female 19.3
Sample B Female 49.8
Sample C Male 71.8
Sample D Male 51.5
Septum
nTPM: 32.9
Samples: 4

Max nTPM: 58.8
Min nTPM: 4.7
Sample A Female 58.8
Sample B Female 48.6
Sample C Male 4.7
Sample D Male 19.6
Ventral pallidum
nTPM: 45.3
Samples: 4

Max nTPM: 66.7
Min nTPM: 14.8
Sample A Female 66.7
Sample B Female 52.2
Sample C Male 14.8
Sample D Male 47.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 99.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 99.7
Samples: 4

Max nTPM: 105.8
Min nTPM: 92.6
Sample A Male 99.7
Sample B Male 100.6
Sample C Female 92.6
Sample D Female 105.8
Septum
nTPM: 45.2
Samples: 4

Max nTPM: 52.6
Min nTPM: 33.7
Sample A Male 33.7
Sample B Male 52.6
Sample C Female 45.2
Sample D Female 49.2
Ventral forebrain
nTPM: 61.4
Samples: 4

Max nTPM: 69.9
Min nTPM: 56.3
Sample A Male 61.2
Sample B Male 56.3
Sample C Female 69.9
Sample D Female 58.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.6
69449020 Antisense, RP_050419_03_B03, Mouse strain C57BL/6J (56 days, male) 6.6
71250306 Antisense, RP_050419_03_B03, Mouse strain C57BL/6J (56 days, male) 5.7
Pallidum
Expression energy: 4.9
69449020 Antisense, RP_050419_03_B03, Mouse strain C57BL/6J (56 days, male) 4.9
71250306 Antisense, RP_050419_03_B03, Mouse strain C57BL/6J (56 days, male) 1.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.