ABOUTMENU
HELP
NEWS
PJA2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:72.9 nTPM
HPA:72.9 nTPM
GTEx:85.1 nTPM
FANTOM5:236.2 Scaled Tags Per Million
Pig:179.2 nTPM
Mouse:376.9 nTPM
Allen mouse:22.8 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA040347
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 72.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 55.2
2846 Female, age 79, unknown 67.6
1857 Female, age 85, left hemisphere 62.8
2288 Male, age 75, left hemisphere 61.4
2481 Female, age 94, left hemisphere 58.8
1854 Male, age 80, left hemisphere 54.6
1781 Male, age 74, unknown 54.4
2290 Female, age 72, unknown 53.4
2289 Male, age 61, right hemisphere 29.0
Claustrum
nTPM: 53.3
2392 Female, age 94, both hemispheres 68.8
1956 Male, age 74, unknown 64.2
2196 Female, age 79, unknown 60.7
2198 Male, age 80, both hemispheres 60.4
2491 Male, age 75, both hemispheres 55.2
2284 Female, age 91, both hemispheres 47.3
2568 Male, age 61, both hemispheres 46.8
2292 Female, age 85, both hemispheres 40.3
2645 Female, age 72, unknown 35.7
Globus pallidus, externus
nTPM: 36.5
2395 Male, age 75, both hemispheres 60.9
2772 Female, age 79, unknown 47.5
1996 Male, age 80, right hemisphere 34.3
2646 Male, age 61, right hemisphere 22.6
2567 Female, age 72, unknown 17.3
Globus pallidus, internus
nTPM: 42.1
2287 Male, age 75, right hemisphere 77.9
2483 Female, age 94, right hemisphere 56.1
2778 Female, age 91, both hemispheres 47.0
1818 Male, age 74, unknown 36.6
2037 Male, age 80, right hemisphere 29.4
2111 Female, age 85, right hemisphere 25.2
2566 Female, age 72, unknown 22.3
Nucleus accumbens
nTPM: 61.3
1856 Female, age 91, right hemisphere 82.2
2391 Female, age 94, left hemisphere 67.0
2286 Male, age 75, left hemisphere 63.7
2824 Male, age 61, right hemisphere 61.5
2698 Female, age 72, unknown 61.2
1783 Male, age 74, unknown 61.1
1806 Female, age 85, left hemisphere 61.1
2732 Male, age 80, right hemisphere 32.3
Nucleus basalis of Meynert
nTPM: 42.7
2821 Male, age 75, both hemispheres 52.8
2393 Male, age 80, right hemisphere 50.7
2484 Female, age 94, left hemisphere 44.4
2569 Male, age 61, both hemispheres 23.1
Nucleus of the diagonal band
nTPM: 72.9
2775 Male, age 80, right hemisphere 85.6
1812 Female, age 91, both hemispheres 85.1
2195 Female, age 85, both hemispheres 72.7
2029 Male, age 61, right hemisphere 67.2
1979 Male, age 74, unknown 53.8
Olfactory tubercle
nTPM: 65.5
1998 Female, age 91, both hemispheres 74.9
1846 Male, age 80, right hemisphere 74.8
2487 Female, age 94, left hemisphere 60.9
2856 Male, age 75, right hemisphere 51.3
Putamen
nTPM: 51.7
1937 Female, age 91, right hemisphere 64.5
1838 Male, age 80, right hemisphere 64.1
2466 Female, age 79, unknown 59.6
2482 Female, age 94, left hemisphere 57.6
1829 Male, age 74, unknown 54.4
2647 Male, age 75, left hemisphere 37.1
2489 Female, age 72, unknown 24.8
Septal nuclei
nTPM: 60.0
2031 Female, age 72, unknown 95.1
1960 Male, age 74, unknown 74.3
2009 Female, age 91, both hemispheres 67.4
2629 Female, age 94, right hemisphere 65.5
2059 Female, age 85, both hemispheres 40.5
2199 Male, age 80, right hemisphere 38.7
2394 Male, age 61, left hemisphere 38.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 85.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 77.5
Samples: 246

Max nTPM: 247.1
Min nTPM: 32.7
Std nTPM: 28.5
Median nTPM: 72.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 247.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 193.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 159.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 147.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 144.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 142.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 139.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 134.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 133.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 132.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 131.3
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 85.1
Samples: 246

Max nTPM: 167.9
Min nTPM: 33.1
Std nTPM: 27.3
Median nTPM: 84.4
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 167.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 153.9
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 153.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 149.7
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 147.7
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 139.9
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 139.5
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 137.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 135.5
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 134.6
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 133.9
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 72.7
Samples: 205

Max nTPM: 169.9
Min nTPM: 36.3
Std nTPM: 23.9
Median nTPM: 69.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 169.9
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 148.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 144.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 136.3
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 122.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 122.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 122.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 121.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 120.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 118.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 117.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 236.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 156.1
FF:10164-103B2 76 years, female 156.1
Globus pallidus
Scaled Tags Per Million: 112.2
FF:10161-103A8 76 years, female 122.6
FF:10175-103C4 60 years, female 101.8
Nucleus accumbens
Scaled Tags Per Million: 203.2
FF:10037-101F1 23-56 years, mixed 203.2
Putamen
Scaled Tags Per Million: 236.2
FF:10176-103C5 60 years, female 236.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 179.2
Pig sample Sample description nTPM
Caudate
nTPM: 150.2
Samples: 4

Max nTPM: 156.8
Min nTPM: 137.8
Sample A Female 156.8
Sample B Female 137.8
Sample C Male 154.3
Sample D Male 151.7
Putamen
nTPM: 179.2
Samples: 4

Max nTPM: 270.3
Min nTPM: 132.3
Sample A Female 132.3
Sample B Female 149.3
Sample C Male 270.3
Sample D Male 164.7
Septum
nTPM: 163.9
Samples: 4

Max nTPM: 198.4
Min nTPM: 143.4
Sample A Female 166.7
Sample B Female 147.0
Sample C Male 198.4
Sample D Male 143.4
Ventral pallidum
nTPM: 149.0
Samples: 4

Max nTPM: 175.6
Min nTPM: 126.5
Sample A Female 175.6
Sample B Female 126.5
Sample C Male 161.9
Sample D Male 131.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 376.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 376.9
Samples: 4

Max nTPM: 408.4
Min nTPM: 351.9
Sample A Male 408.4
Sample B Male 379.0
Sample C Female 351.9
Sample D Female 368.3
Septum
nTPM: 318.3
Samples: 4

Max nTPM: 333.8
Min nTPM: 311.4
Sample A Male 316.6
Sample B Male 333.8
Sample C Female 311.4
Sample D Female 311.4
Ventral forebrain
nTPM: 314.7
Samples: 4

Max nTPM: 334.4
Min nTPM: 302.2
Sample A Male 302.2
Sample B Male 334.4
Sample C Female 308.7
Sample D Female 313.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 22.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 22.8
583577 Antisense, RP_040831_02_G12, Mouse strain C57BL/6J (56 days, male) 22.8
Pallidum
Expression energy: 18.2
583577 Antisense, RP_040831_02_G12, Mouse strain C57BL/6J (56 days, male) 18.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.