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PJA2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.1 nTPM
HPA:52.1 nTPM
GTEx:68.6 nTPM
FANTOM5:122.2 Scaled Tags Per Million
Pig:170.5 nTPM
Mouse:302.0 nTPM
Allen mouse:17.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.3
2411 Female, age 72, unknown 53.1
1870 Female, age 42, unknown 47.5
1827 Male, age 72, unknown 46.1
2019 Male, age 18, unknown 41.1
1833 Male, age 53, unknown 40.9
2219 Male, age 76, both hemispheres 40.8
1830 Male, age 51, unknown 38.2
2586 Male, age 75, left hemisphere 34.2
2666 Male, age 74, left hemisphere 33.5
2828 Female, age 72, unknown 27.8
Dorsal raphe nucleus
nTPM: 39.6
2298 Female, age 72, unknown 47.6
2750 Male, age 76, both hemispheres 40.7
2047 Male, age 72, unknown 39.7
1828 Male, age 53, unknown 37.5
2016 Female, age 72, unknown 32.4
Inferior colliculus
nTPM: 47.9
2097 Female, age 72, unknown 60.2
1848 Female, age 42, unknown 46.8
2849 Male, age 72, unknown 45.6
1890 Male, age 53, unknown 38.8
Median raphe nucleus
nTPM: 49.6
2220 Male, age 76, midline 49.6
Pedunculopontine tegmental nucleus
nTPM: 46.4
1921 Female, age 85, both hemispheres 49.8
2334 Male, age 80, both hemispheres 49.7
2338 Male, age 61, both hemispheres 39.8
Periaquaductal grey, anterior
nTPM: 44.6
1947 Male, age 18, unknown 51.1
2502 Female, age 75, unknown 43.6
1795 Male, age 51, unknown 39.2
Periaquaductal grey, dorsal
nTPM: 41.7
1840 Male, age 53, unknown 49.8
2464 Female, age 72, unknown 40.9
2850 Male, age 76, both hemispheres 40.0
1831 Male, age 72, unknown 36.2
Periaquaductal grey, lateral
nTPM: 35.3
2053 Male, age 18, unknown 36.2
2140 Male, age 76, both hemispheres 35.8
2272 Male, age 74, both hemispheres 34.0
Pretectal area
nTPM: 47.8
2007 Male, age 72, unknown 61.9
1944 Female, age 72, unknown 57.9
1816 Male, age 51, unknown 57.5
1817 Female, age 42, unknown 56.4
1815 Male, age 53, unknown 54.0
2224 Female, age 72, unknown 49.6
2667 Female, age 75, unknown 41.3
2825 Male, age 18, unknown 40.8
2273 Male, age 74, both hemispheres 40.4
2316 Male, age 76, right hemisphere 33.8
2407 Male, age 75, both hemispheres 32.8
Red nucleus
nTPM: 37.3
1821 Female, age 72, unknown 50.6
2725 Female, age 75, unknown 43.8
2785 Male, age 18, unknown 39.3
2584 Male, age 75, left hemisphere 37.7
1865 Male, age 51, unknown 37.5
1954 Female, age 42, unknown 37.4
2503 Female, age 72, unknown 36.6
2588 Male, age 74, left hemisphere 35.5
1904 Male, age 53, unknown 34.7
2227 Male, age 72, unknown 33.3
2769 Male, age 72, unknown 32.9
2823 Male, age 76, right hemisphere 28.8
Substantia nigra
nTPM: 52.1
1916 Female, age 42, unknown 66.2
2241 Male, age 72, unknown 64.4
1889 Female, age 72, unknown 58.3
1941 Male, age 53, unknown 56.0
1851 Male, age 51, unknown 51.9
2409 Female, age 72, unknown 51.4
2590 Female, age 75, unknown 47.6
2699 Male, age 18, unknown 42.1
2665 Male, age 74, both hemispheres 41.8
2583 Male, age 75, right hemisphere 41.1
Superior colliculus
nTPM: 40.7
1895 Male, age 76, right hemisphere 47.8
2587 Male, age 74, left hemisphere 45.3
2087 Female, age 72, unknown 45.0
2261 Male, age 18, unknown 44.7
1839 Male, age 51, unknown 44.1
1796 Male, age 53, unknown 44.0
2668 Female, age 75, unknown 43.4
1913 Female, age 42, unknown 34.1
2664 Male, age 75, both hemispheres 29.6
1995 Male, age 72, unknown 29.2
Ventral tegmental area
nTPM: 46.7
2410 Female, age 72, unknown 58.0
1915 Female, age 42, unknown 50.0
2218 Male, age 76, both hemispheres 49.8
2223 Female, age 72, unknown 45.3
1942 Male, age 51, unknown 40.0
2021 Male, age 53, unknown 37.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.6
Samples: 139

Max nTPM: 157.8
Min nTPM: 39.7
Std nTPM: 21.3
Median nTPM: 63.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 157.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 151.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 149.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 143.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 135.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 109.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 107.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 104.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 104.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 102.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 101.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 122.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 122.2
FF:10158-103A5 76 years, female 122.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 170.5
Pig sample Sample description nTPM
Midbrain
nTPM: 170.5
Samples: 4

Max nTPM: 245.6
Min nTPM: 123.0
Sample A Female 123.0
Sample B Female 145.6
Sample C Male 245.6
Sample D Male 167.7
Periaqueductal gray
nTPM: 133.1
Samples: 3

Max nTPM: 155.2
Min nTPM: 121.2
Sample B Female 121.2
Sample C Male 155.2
Sample D Male 123.0
Substantia nigra
nTPM: 136.7
Samples: 4

Max nTPM: 189.7
Min nTPM: 76.8
Sample A Female 189.7
Sample B Female 117.1
Sample C Male 163.0
Sample D Male 76.8
Superior colliculi
nTPM: 163.2
Samples: 4

Max nTPM: 224.4
Min nTPM: 102.5
Sample A Female 158.8
Sample B Female 102.5
Sample C Male 224.4
Sample D Male 167.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 302.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 302.0
Samples: 4

Max nTPM: 323.9
Min nTPM: 271.9
Sample A Male 271.9
Sample B Male 318.4
Sample C Female 323.9
Sample D Female 293.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.1
583577 Antisense, RP_040831_02_G12, Mouse strain C57BL/6J (56 days, male) 17.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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