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SOX18
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.4 nTPM
HPA:6.4 nTPM
GTEx:13.0 nTPM
FANTOM5:27.5 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:5.1 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 6.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.2
2290 Female, age 72, unknown 6.7
2846 Female, age 79, unknown 6.1
1781 Male, age 74, unknown 5.0
2481 Female, age 94, left hemisphere 3.5
1854 Male, age 80, left hemisphere 3.2
1857 Female, age 85, left hemisphere 3.1
2288 Male, age 75, left hemisphere 3.0
2289 Male, age 61, right hemisphere 2.6
Claustrum
nTPM: 2.9
2284 Female, age 91, both hemispheres 4.1
2292 Female, age 85, both hemispheres 4.1
2645 Female, age 72, unknown 3.8
2196 Female, age 79, unknown 3.1
2568 Male, age 61, both hemispheres 2.7
2392 Female, age 94, both hemispheres 2.5
2491 Male, age 75, both hemispheres 2.1
2198 Male, age 80, both hemispheres 2.0
1956 Male, age 74, unknown 1.9
Globus pallidus, externus
nTPM: 5.1
2646 Male, age 61, right hemisphere 6.7
2567 Female, age 72, unknown 5.9
1996 Male, age 80, right hemisphere 5.2
2772 Female, age 79, unknown 5.2
2395 Male, age 75, both hemispheres 2.3
Globus pallidus, internus
nTPM: 4.7
1818 Male, age 74, unknown 5.3
2287 Male, age 75, right hemisphere 4.9
2483 Female, age 94, right hemisphere 4.9
2566 Female, age 72, unknown 4.9
2778 Female, age 91, both hemispheres 4.8
2037 Male, age 80, right hemisphere 4.3
2111 Female, age 85, right hemisphere 3.7
Nucleus accumbens
nTPM: 2.5
1783 Male, age 74, unknown 3.7
1806 Female, age 85, left hemisphere 3.5
2698 Female, age 72, unknown 3.3
2286 Male, age 75, left hemisphere 2.7
1856 Female, age 91, right hemisphere 2.0
2732 Male, age 80, right hemisphere 1.8
2391 Female, age 94, left hemisphere 1.5
2824 Male, age 61, right hemisphere 1.4
Nucleus basalis of Meynert
nTPM: 6.4
2569 Male, age 61, both hemispheres 9.5
2484 Female, age 94, left hemisphere 8.0
2821 Male, age 75, both hemispheres 4.6
2393 Male, age 80, right hemisphere 3.4
Nucleus of the diagonal band
nTPM: 1.9
2029 Male, age 61, right hemisphere 3.2
1979 Male, age 74, unknown 2.4
2195 Female, age 85, both hemispheres 1.8
1812 Female, age 91, both hemispheres 1.2
2775 Male, age 80, right hemisphere 1.1
Olfactory tubercle
nTPM: 2.2
2856 Male, age 75, right hemisphere 2.8
1998 Female, age 91, both hemispheres 2.3
1846 Male, age 80, right hemisphere 2.0
2487 Female, age 94, left hemisphere 1.7
Putamen
nTPM: 4.5
2489 Female, age 72, unknown 8.2
1838 Male, age 80, right hemisphere 4.5
2466 Female, age 79, unknown 4.5
2482 Female, age 94, left hemisphere 4.0
1829 Male, age 74, unknown 3.6
2647 Male, age 75, left hemisphere 3.6
1937 Female, age 91, right hemisphere 2.7
Septal nuclei
nTPM: 2.1
2394 Male, age 61, left hemisphere 3.6
2031 Female, age 72, unknown 2.6
2199 Male, age 80, right hemisphere 2.4
1960 Male, age 74, unknown 2.3
2059 Female, age 85, both hemispheres 2.2
2629 Female, age 94, right hemisphere 1.0
2009 Female, age 91, both hemispheres 0.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.7
Samples: 246

Max nTPM: 136.1
Min nTPM: 0.8
Std nTPM: 11.5
Median nTPM: 6.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 136.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 77.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 41.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 35.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 35.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 35.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 34.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 30.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 30.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 28.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 26.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.9
Samples: 246

Max nTPM: 77.9
Min nTPM: 0.5
Std nTPM: 8.6
Median nTPM: 5.3
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 77.9
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 61.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 47.5
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 35.3
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 29.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 27.6
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 27.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 27.0
GTEX-1IL2U-0011-R6a-SM-ARZLG 60-69 years, male 26.5
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 25.8
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 24.3
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Brain - Putamen (basal ganglia)
Average nTPM: 13.0
Samples: 205

Max nTPM: 97.0
Min nTPM: 1.1
Std nTPM: 11.3
Median nTPM: 9.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 97.0
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 71.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 49.4
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 44.4
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 40.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 39.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 38.5
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 38.4
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 38.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 36.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 36.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 27.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.2
FF:10164-103B2 76 years, female 13.2
Globus pallidus
Scaled Tags Per Million: 27.5
FF:10175-103C4 60 years, female 38.6
FF:10161-103A8 76 years, female 16.4
Nucleus accumbens
Scaled Tags Per Million: 17.3
FF:10037-101F1 23-56 years, mixed 17.3
Putamen
Scaled Tags Per Million: 20.6
FF:10176-103C5 60 years, female 20.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.1
Pig sample Sample description nTPM
Caudate
nTPM: 2.5
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 2.4
Sample C Male 3.0
Sample D Male 2.7
Putamen
nTPM: 3.1
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.5
Sample A Female 2.9
Sample B Female 2.9
Sample C Male 2.5
Sample D Male 4.0
Septum
nTPM: 2.3
Samples: 4

Max nTPM: 3.4
Min nTPM: 0.9
Sample A Female 3.0
Sample B Female 1.9
Sample C Male 3.4
Sample D Male 0.9
Ventral pallidum
nTPM: 2.5
Samples: 4

Max nTPM: 3.0
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 2.7
Sample C Male 3.0
Sample D Male 2.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.1
Samples: 4

Max nTPM: 5.9
Min nTPM: 4.2
Sample A Male 5.4
Sample B Male 5.0
Sample C Female 5.9
Sample D Female 4.2
Septum
nTPM: 3.8
Samples: 4

Max nTPM: 4.5
Min nTPM: 2.5
Sample A Male 4.4
Sample B Male 3.6
Sample C Female 4.5
Sample D Female 2.5
Ventral forebrain
nTPM: 5.0
Samples: 4

Max nTPM: 8.0
Min nTPM: 3.0
Sample A Male 5.3
Sample B Male 3.6
Sample C Female 8.0
Sample D Female 3.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
119681 Antisense, RP_040507_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1
80472043 Antisense, RP_070212_03_E06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
119681 Antisense, RP_040507_01_B08, Mouse strain C57BL/6J (56 days, male) 0.1
80472043 Antisense, RP_070212_03_E06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.