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BRD2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.4 nTPM
HPA:2.4 nTPM
GTEx:46.8 nTPM
FANTOM5:135.1 Scaled Tags Per Million
Pig:74.0 nTPM
Mouse:96.7 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.0
2019 Male, age 18, unknown 5.0
2666 Male, age 74, left hemisphere 2.9
2411 Female, age 72, unknown 1.2
1827 Male, age 72, unknown 0.7
1830 Male, age 51, unknown 0.7
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2219 Male, age 76, both hemispheres 0.0
2586 Male, age 75, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 0.0
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.6
2849 Male, age 72, unknown 1.6
1848 Female, age 42, unknown 0.9
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.8
2220 Male, age 76, midline 0.8
Pedunculopontine tegmental nucleus
nTPM: 0.0
1921 Female, age 85, both hemispheres 0.0
2334 Male, age 80, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 1.6
2502 Female, age 75, unknown 2.6
1947 Male, age 18, unknown 2.2
1795 Male, age 51, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 1.0
2850 Male, age 76, both hemispheres 4.2
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
Periaquaductal grey, lateral
nTPM: 1.3
2272 Male, age 74, both hemispheres 1.9
2140 Male, age 76, both hemispheres 1.2
2053 Male, age 18, unknown 0.8
Pretectal area
nTPM: 2.4
1817 Female, age 42, unknown 6.8
2007 Male, age 72, unknown 4.7
1815 Male, age 53, unknown 4.4
1816 Male, age 51, unknown 3.0
2667 Female, age 75, unknown 2.6
2407 Male, age 75, both hemispheres 2.4
1944 Female, age 72, unknown 2.1
2224 Female, age 72, unknown 0.3
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 0.7
1865 Male, age 51, unknown 2.8
2584 Male, age 75, left hemisphere 2.1
1904 Male, age 53, unknown 1.5
1821 Female, age 72, unknown 1.3
2588 Male, age 74, left hemisphere 0.9
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 1.4
2590 Female, age 75, unknown 3.3
1941 Male, age 53, unknown 3.0
1916 Female, age 42, unknown 2.5
2583 Male, age 75, right hemisphere 2.1
1889 Female, age 72, unknown 1.5
1851 Male, age 51, unknown 1.4
2665 Male, age 74, both hemispheres 0.8
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 0.4
1913 Female, age 42, unknown 3.7
1839 Male, age 51, unknown 0.4
1995 Male, age 72, unknown 0.1
1796 Male, age 53, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
2087 Female, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
2668 Female, age 75, unknown 0.0
Ventral tegmental area
nTPM: 0.8
2410 Female, age 72, unknown 3.1
2218 Male, age 76, both hemispheres 1.8
1915 Female, age 42, unknown 0.0
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2223 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.8
Samples: 139

Max nTPM: 70.0
Min nTPM: 28.1
Std nTPM: 7.2
Median nTPM: 46.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 70.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 67.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 65.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 64.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 59.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 58.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 58.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 58.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 58.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 57.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 135.1
FF:10158-103A5 76 years, female 135.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.0
Pig sample Sample description nTPM
Midbrain
nTPM: 71.4
Samples: 4

Max nTPM: 84.9
Min nTPM: 59.7
Sample A Female 75.2
Sample B Female 59.7
Sample C Male 84.9
Sample D Male 65.6
Periaqueductal gray
nTPM: 61.7
Samples: 3

Max nTPM: 67.4
Min nTPM: 57.9
Sample B Female 57.9
Sample C Male 67.4
Sample D Male 59.7
Substantia nigra
nTPM: 69.8
Samples: 4

Max nTPM: 75.5
Min nTPM: 64.9
Sample A Female 68.6
Sample B Female 64.9
Sample C Male 75.5
Sample D Male 70.0
Superior colliculi
nTPM: 74.0
Samples: 4

Max nTPM: 82.9
Min nTPM: 65.3
Sample A Female 70.3
Sample B Female 65.3
Sample C Male 82.9
Sample D Male 77.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 96.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.7
Samples: 4

Max nTPM: 100.9
Min nTPM: 92.5
Sample A Male 97.0
Sample B Male 96.3
Sample C Female 100.9
Sample D Female 92.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
70305496 Antisense, RP_050609_04_C12, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.