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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.2 nTPM
HPA:36.2 nTPM
GTEx:37.1 nTPM
FANTOM5:133.5 Scaled Tags Per Million
Mouse:82.9 nTPM
Allen mouse:0.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.9
2846 Female, age 79, unknown 36.3
2288 Male, age 75, left hemisphere 35.2
1857 Female, age 85, left hemisphere 34.8
2290 Female, age 72, unknown 34.7
1854 Male, age 80, left hemisphere 33.6
1781 Male, age 74, unknown 33.2
2481 Female, age 94, left hemisphere 32.2
2289 Male, age 61, right hemisphere 31.4
Claustrum
nTPM: 33.7
2198 Male, age 80, both hemispheres 36.3
1956 Male, age 74, unknown 35.6
2196 Female, age 79, unknown 35.5
2645 Female, age 72, unknown 33.4
2392 Female, age 94, both hemispheres 32.9
2491 Male, age 75, both hemispheres 32.8
2568 Male, age 61, both hemispheres 32.6
2292 Female, age 85, both hemispheres 32.3
2284 Female, age 91, both hemispheres 31.9
Globus pallidus, externus
nTPM: 30.6
2395 Male, age 75, both hemispheres 32.7
1996 Male, age 80, right hemisphere 32.3
2772 Female, age 79, unknown 30.8
2646 Male, age 61, right hemisphere 29.8
2567 Female, age 72, unknown 27.4
Globus pallidus, internus
nTPM: 31.9
2287 Male, age 75, right hemisphere 34.0
2778 Female, age 91, both hemispheres 33.5
2483 Female, age 94, right hemisphere 32.2
2037 Male, age 80, right hemisphere 31.7
2111 Female, age 85, right hemisphere 31.7
1818 Male, age 74, unknown 30.8
2566 Female, age 72, unknown 29.8
Nucleus accumbens
nTPM: 34.4
1856 Female, age 91, right hemisphere 37.9
2698 Female, age 72, unknown 37.7
1806 Female, age 85, left hemisphere 35.2
1783 Male, age 74, unknown 34.5
2391 Female, age 94, left hemisphere 34.0
2286 Male, age 75, left hemisphere 33.1
2732 Male, age 80, right hemisphere 31.6
2824 Male, age 61, right hemisphere 31.1
Nucleus basalis of Meynert
nTPM: 31.9
2484 Female, age 94, left hemisphere 33.9
2821 Male, age 75, both hemispheres 33.2
2393 Male, age 80, right hemisphere 31.9
2569 Male, age 61, both hemispheres 28.7
Nucleus of the diagonal band
nTPM: 36.2
1979 Male, age 74, unknown 40.5
2195 Female, age 85, both hemispheres 37.1
2775 Male, age 80, right hemisphere 35.5
1812 Female, age 91, both hemispheres 34.5
2029 Male, age 61, right hemisphere 33.3
Olfactory tubercle
nTPM: 34.1
1846 Male, age 80, right hemisphere 35.5
1998 Female, age 91, both hemispheres 34.1
2487 Female, age 94, left hemisphere 33.8
2856 Male, age 75, right hemisphere 33.0
Putamen
nTPM: 32.9
2466 Female, age 79, unknown 34.8
2482 Female, age 94, left hemisphere 33.6
1838 Male, age 80, right hemisphere 33.1
1937 Female, age 91, right hemisphere 33.1
1829 Male, age 74, unknown 32.6
2489 Female, age 72, unknown 32.5
2647 Male, age 75, left hemisphere 30.4
Septal nuclei
nTPM: 35.5
1960 Male, age 74, unknown 37.7
2199 Male, age 80, right hemisphere 37.0
2031 Female, age 72, unknown 36.0
2629 Female, age 94, right hemisphere 35.4
2009 Female, age 91, both hemispheres 34.7
2394 Male, age 61, left hemisphere 34.0
2059 Female, age 85, both hemispheres 33.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.9
Samples: 246

Max nTPM: 60.9
Min nTPM: 13.5
Std nTPM: 6.6
Median nTPM: 27.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 60.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 53.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 50.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 48.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 48.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 47.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 44.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 44.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 44.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 43.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 43.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.1
Samples: 246

Max nTPM: 72.8
Min nTPM: 19.3
Std nTPM: 8.1
Median nTPM: 36.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 72.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 67.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 66.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 57.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 57.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 56.4
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 53.9
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 53.9
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 53.2
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 53.0
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 52.5
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Brain - Putamen (basal ganglia)
Average nTPM: 29.7
Samples: 205

Max nTPM: 50.1
Min nTPM: 15.8
Std nTPM: 6.1
Median nTPM: 29.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 50.1
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 49.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 46.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 45.1
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 43.6
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 43.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 42.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 42.3
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 42.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 41.9
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 41.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 133.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 104.7
FF:10164-103B2 76 years, female 104.7
Globus pallidus
Scaled Tags Per Million: 114.3
FF:10175-103C4 60 years, female 142.0
FF:10161-103A8 76 years, female 86.5
Nucleus accumbens
Scaled Tags Per Million: 133.5
FF:10037-101F1 23-56 years, mixed 133.5
Putamen
Scaled Tags Per Million: 133.1
FF:10176-103C5 60 years, female 133.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 82.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 70.1
Samples: 4

Max nTPM: 72.6
Min nTPM: 67.9
Sample A Male 69.1
Sample B Male 72.6
Sample C Female 70.9
Sample D Female 67.9
Septum
nTPM: 82.9
Samples: 4

Max nTPM: 88.8
Min nTPM: 80.2
Sample A Male 88.8
Sample B Male 82.0
Sample C Female 80.2
Sample D Female 80.4
Ventral forebrain
nTPM: 70.3
Samples: 4

Max nTPM: 77.3
Min nTPM: 63.6
Sample A Male 63.6
Sample B Male 73.4
Sample C Female 77.3
Sample D Female 67.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
71022870 Antisense, RP_050719_01_F11, Mouse strain C57BL/6J (56 days, male) 0.7
72283725 Antisense, RP_051019_02_A05, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.5
71022870 Antisense, RP_050719_01_F11, Mouse strain C57BL/6J (56 days, male) 0.9
72283725 Antisense, RP_051019_02_A05, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.