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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA:9.5 nTPM
GTEx:68.2 nTPM
FANTOM5:32.1 Scaled Tags Per Million
Pig:78.0 nTPM
Mouse:55.8 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.5
2219 Male, age 76, both hemispheres 67.6
2828 Female, age 72, unknown 4.0
2586 Male, age 75, left hemisphere 3.5
1870 Female, age 42, unknown 3.2
1827 Male, age 72, unknown 2.9
1833 Male, age 53, unknown 2.9
1830 Male, age 51, unknown 2.8
2019 Male, age 18, unknown 2.8
2666 Male, age 74, left hemisphere 2.6
2411 Female, age 72, unknown 2.5
Dorsal raphe nucleus
nTPM: 2.3
1828 Male, age 53, unknown 2.9
2047 Male, age 72, unknown 2.9
2750 Male, age 76, both hemispheres 2.4
2016 Female, age 72, unknown 2.0
2298 Female, age 72, unknown 1.5
Inferior colliculus
nTPM: 2.8
1848 Female, age 42, unknown 3.6
1890 Male, age 53, unknown 2.9
2849 Male, age 72, unknown 2.9
2097 Female, age 72, unknown 2.0
Median raphe nucleus
nTPM: 2.4
2220 Male, age 76, midline 2.4
Pedunculopontine tegmental nucleus
nTPM: 2.9
2338 Male, age 61, both hemispheres 3.1
2334 Male, age 80, both hemispheres 3.0
1921 Female, age 85, both hemispheres 2.6
Periaquaductal grey, anterior
nTPM: 3.4
1947 Male, age 18, unknown 3.8
1795 Male, age 51, unknown 3.5
2502 Female, age 75, unknown 2.8
Periaquaductal grey, dorsal
nTPM: 2.6
1831 Male, age 72, unknown 2.9
1840 Male, age 53, unknown 2.9
2850 Male, age 76, both hemispheres 2.7
2464 Female, age 72, unknown 1.9
Periaquaductal grey, lateral
nTPM: 2.9
2272 Male, age 74, both hemispheres 3.2
2053 Male, age 18, unknown 3.0
2140 Male, age 76, both hemispheres 2.4
Pretectal area
nTPM: 3.0
2667 Female, age 75, unknown 4.2
1816 Male, age 51, unknown 4.1
1944 Female, age 72, unknown 3.3
1817 Female, age 42, unknown 3.2
2825 Male, age 18, unknown 3.0
1815 Male, age 53, unknown 2.9
2007 Male, age 72, unknown 2.9
2273 Male, age 74, both hemispheres 2.6
2407 Male, age 75, both hemispheres 2.6
2316 Male, age 76, right hemisphere 2.4
2224 Female, age 72, unknown 2.2
Red nucleus
nTPM: 2.9
2584 Male, age 75, left hemisphere 4.8
1865 Male, age 51, unknown 3.0
2785 Male, age 18, unknown 3.0
1904 Male, age 53, unknown 2.9
2227 Male, age 72, unknown 2.9
2769 Male, age 72, unknown 2.9
1821 Female, age 72, unknown 2.8
2725 Female, age 75, unknown 2.8
1954 Female, age 42, unknown 2.7
2588 Male, age 74, left hemisphere 2.6
2823 Male, age 76, right hemisphere 2.4
2503 Female, age 72, unknown 2.3
Substantia nigra
nTPM: 3.0
1941 Male, age 53, unknown 3.5
1851 Male, age 51, unknown 3.2
2409 Female, age 72, unknown 3.2
1889 Female, age 72, unknown 3.1
2699 Male, age 18, unknown 3.1
2241 Male, age 72, unknown 2.9
2590 Female, age 75, unknown 2.8
1916 Female, age 42, unknown 2.7
2583 Male, age 75, right hemisphere 2.6
2665 Male, age 74, both hemispheres 2.6
Superior colliculus
nTPM: 3.0
2261 Male, age 18, unknown 3.7
1995 Male, age 72, unknown 3.4
1895 Male, age 76, right hemisphere 3.2
2087 Female, age 72, unknown 3.2
1796 Male, age 53, unknown 2.9
1839 Male, age 51, unknown 2.8
2668 Female, age 75, unknown 2.8
1913 Female, age 42, unknown 2.7
2587 Male, age 74, left hemisphere 2.6
2664 Male, age 75, both hemispheres 2.6
Ventral tegmental area
nTPM: 2.7
1942 Male, age 51, unknown 2.9
2021 Male, age 53, unknown 2.9
2410 Female, age 72, unknown 2.8
1915 Female, age 42, unknown 2.7
2223 Female, age 72, unknown 2.6
2218 Male, age 76, both hemispheres 2.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.2
Samples: 139

Max nTPM: 116.0
Min nTPM: 37.8
Std nTPM: 11.5
Median nTPM: 68.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 116.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 96.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 92.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 89.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 86.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 86.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 86.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 84.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 84.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 83.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 83.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.1
FF:10158-103A5 76 years, female 32.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 78.0
Pig sample Sample description nTPM
Midbrain
nTPM: 78.0
Samples: 4

Max nTPM: 94.2
Min nTPM: 65.3
Sample A Female 78.6
Sample B Female 65.3
Sample C Male 94.2
Sample D Male 73.9
Periaqueductal gray
nTPM: 67.1
Samples: 3

Max nTPM: 79.9
Min nTPM: 58.0
Sample B Female 58.0
Sample C Male 79.9
Sample D Male 63.5
Substantia nigra
nTPM: 76.3
Samples: 4

Max nTPM: 101.4
Min nTPM: 58.7
Sample A Female 86.2
Sample B Female 59.0
Sample C Male 101.4
Sample D Male 58.7
Superior colliculi
nTPM: 72.0
Samples: 4

Max nTPM: 84.4
Min nTPM: 49.0
Sample A Female 80.8
Sample B Female 49.0
Sample C Male 73.8
Sample D Male 84.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.8
Samples: 4

Max nTPM: 59.0
Min nTPM: 51.6
Sample A Male 53.6
Sample B Male 51.6
Sample C Female 59.0
Sample D Female 58.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
68269682 Antisense, RP_041129_02_A08, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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