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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:63.1 nTPM
HPA:63.1 nTPM
GTEx:65.7 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Pig:55.7 nTPM

CAUDATE - Antibody stainingi
Antibody HPA045727
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 63.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 63.1
2481 Female, age 94, left hemisphere 69.7
1857 Female, age 85, left hemisphere 64.5
2288 Male, age 75, left hemisphere 63.6
2290 Female, age 72, unknown 63.5
1854 Male, age 80, left hemisphere 62.9
2846 Female, age 79, unknown 62.2
2289 Male, age 61, right hemisphere 59.8
1781 Male, age 74, unknown 58.8
Claustrum
nTPM: 55.1
2392 Female, age 94, both hemispheres 59.4
1956 Male, age 74, unknown 57.3
2198 Male, age 80, both hemispheres 56.4
2196 Female, age 79, unknown 55.2
2491 Male, age 75, both hemispheres 54.9
2645 Female, age 72, unknown 53.6
2568 Male, age 61, both hemispheres 53.4
2284 Female, age 91, both hemispheres 52.9
2292 Female, age 85, both hemispheres 52.6
Globus pallidus, externus
nTPM: 62.2
2772 Female, age 79, unknown 69.7
1996 Male, age 80, right hemisphere 68.1
2395 Male, age 75, both hemispheres 61.7
2646 Male, age 61, right hemisphere 58.6
2567 Female, age 72, unknown 53.0
Globus pallidus, internus
nTPM: 62.8
2483 Female, age 94, right hemisphere 69.1
2778 Female, age 91, both hemispheres 66.3
2037 Male, age 80, right hemisphere 65.3
1818 Male, age 74, unknown 64.2
2287 Male, age 75, right hemisphere 63.5
2111 Female, age 85, right hemisphere 57.3
2566 Female, age 72, unknown 54.2
Nucleus accumbens
nTPM: 62.5
2286 Male, age 75, left hemisphere 66.6
2391 Female, age 94, left hemisphere 65.8
1806 Female, age 85, left hemisphere 64.0
1856 Female, age 91, right hemisphere 62.6
1783 Male, age 74, unknown 61.7
2824 Male, age 61, right hemisphere 61.1
2732 Male, age 80, right hemisphere 59.8
2698 Female, age 72, unknown 58.1
Nucleus basalis of Meynert
nTPM: 59.5
2393 Male, age 80, right hemisphere 61.8
2484 Female, age 94, left hemisphere 60.4
2569 Male, age 61, both hemispheres 60.0
2821 Male, age 75, both hemispheres 55.7
Nucleus of the diagonal band
nTPM: 58.6
1812 Female, age 91, both hemispheres 61.5
2775 Male, age 80, right hemisphere 59.4
2029 Male, age 61, right hemisphere 58.4
1979 Male, age 74, unknown 57.8
2195 Female, age 85, both hemispheres 56.1
Olfactory tubercle
nTPM: 56.8
1846 Male, age 80, right hemisphere 59.3
1998 Female, age 91, both hemispheres 57.1
2856 Male, age 75, right hemisphere 56.2
2487 Female, age 94, left hemisphere 54.8
Putamen
nTPM: 60.4
2466 Female, age 79, unknown 65.8
2482 Female, age 94, left hemisphere 63.3
1937 Female, age 91, right hemisphere 62.5
1838 Male, age 80, right hemisphere 61.1
1829 Male, age 74, unknown 60.4
2489 Female, age 72, unknown 55.0
2647 Male, age 75, left hemisphere 54.5
Septal nuclei
nTPM: 58.7
2031 Female, age 72, unknown 63.5
1960 Male, age 74, unknown 59.5
2009 Female, age 91, both hemispheres 59.1
2059 Female, age 85, both hemispheres 59.1
2394 Male, age 61, left hemisphere 57.7
2199 Male, age 80, right hemisphere 57.0
2629 Female, age 94, right hemisphere 55.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 65.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 65.7
Samples: 246

Max nTPM: 161.7
Min nTPM: 37.9
Std nTPM: 14.7
Median nTPM: 62.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 161.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 124.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 123.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 121.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 114.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 101.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 98.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 96.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 96.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 96.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 94.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 58.8
Samples: 246

Max nTPM: 138.2
Min nTPM: 27.6
Std nTPM: 13.5
Median nTPM: 57.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 138.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 106.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 97.7
GTEX-T2IS-0011-R6A-SM-32QP2 20-29 years, female 93.1
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 91.9
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 87.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 87.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 86.8
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 84.0
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 83.0
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 81.5
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Brain - Putamen (basal ganglia)
Average nTPM: 64.5
Samples: 205

Max nTPM: 133.7
Min nTPM: 39.9
Std nTPM: 13.6
Median nTPM: 63.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 133.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 130.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 112.0
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 100.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 99.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 96.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 96.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 92.9
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 88.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 87.7
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 86.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 28.1
FF:10164-103B2 76 years, female 28.1
Globus pallidus
Scaled Tags Per Million: 28.1
FF:10175-103C4 60 years, female 29.9
FF:10161-103A8 76 years, female 26.3
Nucleus accumbens
Scaled Tags Per Million: 30.3
FF:10037-101F1 23-56 years, mixed 30.3
Putamen
Scaled Tags Per Million: 26.5
FF:10176-103C5 60 years, female 26.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 55.7
Pig sample Sample description nTPM
Caudate
nTPM: 50.0
Samples: 4

Max nTPM: 56.4
Min nTPM: 45.1
Sample A Female 47.5
Sample B Female 51.1
Sample C Male 56.4
Sample D Male 45.1
Putamen
nTPM: 55.7
Samples: 4

Max nTPM: 72.7
Min nTPM: 45.7
Sample A Female 54.5
Sample B Female 45.7
Sample C Male 72.7
Sample D Male 50.0
Septum
nTPM: 51.0
Samples: 4

Max nTPM: 57.8
Min nTPM: 47.5
Sample A Female 57.8
Sample B Female 49.0
Sample C Male 49.8
Sample D Male 47.5
Ventral pallidum
nTPM: 49.6
Samples: 4

Max nTPM: 59.9
Min nTPM: 43.9
Sample A Female 48.3
Sample B Female 59.9
Sample C Male 46.2
Sample D Male 43.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.