ABOUTMENU
HELP
NEWS
LSM2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.6 nTPM
HPA:19.6 nTPM
GTEx:36.2 nTPM
FANTOM5:55.6 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:6.3 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.1
2411 Female, age 72, unknown 22.7
2828 Female, age 72, unknown 20.5
2586 Male, age 75, left hemisphere 19.8
1833 Male, age 53, unknown 19.7
1870 Female, age 42, unknown 18.9
2019 Male, age 18, unknown 18.8
2666 Male, age 74, left hemisphere 18.4
1830 Male, age 51, unknown 17.7
1827 Male, age 72, unknown 17.5
2219 Male, age 76, both hemispheres 16.6
Dorsal raphe nucleus
nTPM: 18.1
1828 Male, age 53, unknown 20.6
2750 Male, age 76, both hemispheres 19.1
2298 Female, age 72, unknown 17.4
2016 Female, age 72, unknown 17.2
2047 Male, age 72, unknown 16.1
Inferior colliculus
nTPM: 16.3
2097 Female, age 72, unknown 17.1
1848 Female, age 42, unknown 16.9
1890 Male, age 53, unknown 15.5
2849 Male, age 72, unknown 15.5
Median raphe nucleus
nTPM: 18.6
2220 Male, age 76, midline 18.6
Pedunculopontine tegmental nucleus
nTPM: 19.6
2334 Male, age 80, both hemispheres 20.8
1921 Female, age 85, both hemispheres 19.1
2338 Male, age 61, both hemispheres 19.1
Periaquaductal grey, anterior
nTPM: 17.9
2502 Female, age 75, unknown 18.9
1947 Male, age 18, unknown 18.5
1795 Male, age 51, unknown 16.3
Periaquaductal grey, dorsal
nTPM: 18.8
1840 Male, age 53, unknown 19.6
2464 Female, age 72, unknown 19.5
1831 Male, age 72, unknown 18.6
2850 Male, age 76, both hemispheres 17.5
Periaquaductal grey, lateral
nTPM: 17.8
2140 Male, age 76, both hemispheres 19.0
2053 Male, age 18, unknown 17.9
2272 Male, age 74, both hemispheres 16.5
Pretectal area
nTPM: 16.5
1815 Male, age 53, unknown 20.4
2007 Male, age 72, unknown 18.3
2224 Female, age 72, unknown 18.0
2273 Male, age 74, both hemispheres 17.6
1817 Female, age 42, unknown 16.7
2407 Male, age 75, both hemispheres 16.6
1816 Male, age 51, unknown 16.2
2316 Male, age 76, right hemisphere 15.9
1944 Female, age 72, unknown 15.7
2825 Male, age 18, unknown 13.9
2667 Female, age 75, unknown 12.4
Red nucleus
nTPM: 17.3
1821 Female, age 72, unknown 23.5
2725 Female, age 75, unknown 21.7
2785 Male, age 18, unknown 21.0
1954 Female, age 42, unknown 17.9
1865 Male, age 51, unknown 17.7
2769 Male, age 72, unknown 17.7
2503 Female, age 72, unknown 15.8
2227 Male, age 72, unknown 15.5
2588 Male, age 74, left hemisphere 15.2
2823 Male, age 76, right hemisphere 15.1
1904 Male, age 53, unknown 14.6
2584 Male, age 75, left hemisphere 12.4
Substantia nigra
nTPM: 17.9
2409 Female, age 72, unknown 23.9
2590 Female, age 75, unknown 20.8
2665 Male, age 74, both hemispheres 20.0
2699 Male, age 18, unknown 17.5
1851 Male, age 51, unknown 17.3
2241 Male, age 72, unknown 17.3
1889 Female, age 72, unknown 17.0
1916 Female, age 42, unknown 16.9
1941 Male, age 53, unknown 16.2
2583 Male, age 75, right hemisphere 12.4
Superior colliculus
nTPM: 18.0
2664 Male, age 75, both hemispheres 20.7
2668 Female, age 75, unknown 19.9
1995 Male, age 72, unknown 18.9
1913 Female, age 42, unknown 18.6
2587 Male, age 74, left hemisphere 17.5
2087 Female, age 72, unknown 17.3
1839 Male, age 51, unknown 17.1
1895 Male, age 76, right hemisphere 17.0
1796 Male, age 53, unknown 16.6
2261 Male, age 18, unknown 16.2
Ventral tegmental area
nTPM: 17.8
2410 Female, age 72, unknown 22.9
2223 Female, age 72, unknown 19.0
1942 Male, age 51, unknown 18.2
1915 Female, age 42, unknown 17.0
2021 Male, age 53, unknown 15.6
2218 Male, age 76, both hemispheres 13.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.2
Samples: 139

Max nTPM: 77.0
Min nTPM: 19.2
Std nTPM: 9.5
Median nTPM: 35.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 77.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 71.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 59.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 59.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 59.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 54.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 54.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 53.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 51.7
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 51.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 50.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.6
FF:10158-103A5 76 years, female 55.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.7
Pig sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 40.0
Min nTPM: 18.3
Sample A Female 40.0
Sample B Female 20.6
Sample C Male 20.1
Sample D Male 18.3
Periaqueductal gray
nTPM: 19.3
Samples: 3

Max nTPM: 20.0
Min nTPM: 18.0
Sample B Female 20.0
Sample C Male 19.9
Sample D Male 18.0
Substantia nigra
nTPM: 24.6
Samples: 4

Max nTPM: 30.6
Min nTPM: 20.5
Sample A Female 30.6
Sample B Female 20.5
Sample C Male 20.9
Sample D Male 26.4
Superior colliculi
nTPM: 24.2
Samples: 4

Max nTPM: 30.6
Min nTPM: 19.8
Sample A Female 30.6
Sample B Female 19.8
Sample C Male 24.4
Sample D Male 22.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 8.2
Min nTPM: 4.3
Sample A Male 8.2
Sample B Male 7.6
Sample C Female 5.1
Sample D Female 4.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68301114 Antisense, RP_041129_02_F04, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.