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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.6 nTPM
HPA:56.6 nTPM
GTEx:49.5 nTPM
FANTOM5:4.4 Scaled Tags Per Million
Pig:13.9 nTPM
Mouse:38.7 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.8
2586 Male, age 75, left hemisphere 58.0
2219 Male, age 76, both hemispheres 50.9
1827 Male, age 72, unknown 41.0
2828 Female, age 72, unknown 39.9
2411 Female, age 72, unknown 31.5
2666 Male, age 74, left hemisphere 30.0
1833 Male, age 53, unknown 29.7
2019 Male, age 18, unknown 29.5
1830 Male, age 51, unknown 26.0
1870 Female, age 42, unknown 21.7
Dorsal raphe nucleus
nTPM: 26.3
1828 Male, age 53, unknown 30.7
2047 Male, age 72, unknown 28.1
2016 Female, age 72, unknown 27.0
2298 Female, age 72, unknown 25.9
2750 Male, age 76, both hemispheres 19.9
Inferior colliculus
nTPM: 39.5
1890 Male, age 53, unknown 48.8
2097 Female, age 72, unknown 40.3
1848 Female, age 42, unknown 36.4
2849 Male, age 72, unknown 32.5
Median raphe nucleus
nTPM: 20.0
2220 Male, age 76, midline 20.0
Pedunculopontine tegmental nucleus
nTPM: 19.7
1921 Female, age 85, both hemispheres 29.9
2334 Male, age 80, both hemispheres 19.4
2338 Male, age 61, both hemispheres 9.7
Periaquaductal grey, anterior
nTPM: 32.9
2502 Female, age 75, unknown 42.7
1795 Male, age 51, unknown 30.0
1947 Male, age 18, unknown 25.8
Periaquaductal grey, dorsal
nTPM: 29.3
1840 Male, age 53, unknown 34.8
2464 Female, age 72, unknown 32.6
1831 Male, age 72, unknown 31.6
2850 Male, age 76, both hemispheres 18.1
Periaquaductal grey, lateral
nTPM: 24.1
2053 Male, age 18, unknown 30.4
2140 Male, age 76, both hemispheres 23.8
2272 Male, age 74, both hemispheres 18.3
Pretectal area
nTPM: 33.4
1816 Male, age 51, unknown 52.0
1944 Female, age 72, unknown 51.7
1817 Female, age 42, unknown 42.4
2007 Male, age 72, unknown 39.5
1815 Male, age 53, unknown 37.2
2667 Female, age 75, unknown 31.0
2825 Male, age 18, unknown 26.2
2407 Male, age 75, both hemispheres 24.4
2316 Male, age 76, right hemisphere 23.3
2224 Female, age 72, unknown 21.3
2273 Male, age 74, both hemispheres 18.6
Red nucleus
nTPM: 31.6
2588 Male, age 74, left hemisphere 45.3
1904 Male, age 53, unknown 34.2
1954 Female, age 42, unknown 33.2
2584 Male, age 75, left hemisphere 33.0
2503 Female, age 72, unknown 32.7
2227 Male, age 72, unknown 31.0
2769 Male, age 72, unknown 30.8
1821 Female, age 72, unknown 29.8
2785 Male, age 18, unknown 29.3
2725 Female, age 75, unknown 28.4
1865 Male, age 51, unknown 27.3
2823 Male, age 76, right hemisphere 24.5
Substantia nigra
nTPM: 56.6
1916 Female, age 42, unknown 92.0
2665 Male, age 74, both hemispheres 77.0
2699 Male, age 18, unknown 67.0
1851 Male, age 51, unknown 66.3
2409 Female, age 72, unknown 50.0
2583 Male, age 75, right hemisphere 46.4
2241 Male, age 72, unknown 45.0
1889 Female, age 72, unknown 42.8
2590 Female, age 75, unknown 42.3
1941 Male, age 53, unknown 37.2
Superior colliculus
nTPM: 34.7
2087 Female, age 72, unknown 45.0
2664 Male, age 75, both hemispheres 41.7
1796 Male, age 53, unknown 41.1
2261 Male, age 18, unknown 40.0
2668 Female, age 75, unknown 37.0
1895 Male, age 76, right hemisphere 33.6
1839 Male, age 51, unknown 30.4
1995 Male, age 72, unknown 28.5
2587 Male, age 74, left hemisphere 28.1
1913 Female, age 42, unknown 21.7
Ventral tegmental area
nTPM: 42.3
2410 Female, age 72, unknown 60.6
1915 Female, age 42, unknown 55.9
2218 Male, age 76, both hemispheres 53.6
1942 Male, age 51, unknown 35.2
2223 Female, age 72, unknown 24.3
2021 Male, age 53, unknown 23.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 49.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.5
Samples: 139

Max nTPM: 111.2
Min nTPM: 7.6
Std nTPM: 24.2
Median nTPM: 46.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 111.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 106.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 105.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 98.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 97.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 94.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 92.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 92.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 89.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 87.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 85.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.4
FF:10158-103A5 76 years, female 4.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.9
Pig sample Sample description nTPM
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 19.3
Min nTPM: 2.7
Sample A Female 2.7
Sample B Female 6.7
Sample C Male 18.4
Sample D Male 19.3
Periaqueductal gray
nTPM: 6.4
Samples: 3

Max nTPM: 8.6
Min nTPM: 5.2
Sample B Female 5.2
Sample C Male 8.6
Sample D Male 5.5
Substantia nigra
nTPM: 9.7
Samples: 4

Max nTPM: 15.3
Min nTPM: 3.9
Sample A Female 13.1
Sample B Female 6.5
Sample C Male 15.3
Sample D Male 3.9
Superior colliculi
nTPM: 13.9
Samples: 4

Max nTPM: 16.4
Min nTPM: 8.7
Sample A Female 16.4
Sample B Female 8.7
Sample C Male 15.2
Sample D Male 15.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.7
Samples: 4

Max nTPM: 44.1
Min nTPM: 34.9
Sample A Male 44.1
Sample B Male 34.9
Sample C Female 36.5
Sample D Female 39.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
73497059 Antisense, RP_051019_04_B10, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.