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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3620.0 nTPM
HPA:3620.0 nTPM
GTEx:5919.5 nTPM
FANTOM5:22.9 Scaled Tags Per Million
Pig:1492.1 nTPM
Mouse:1260.4 nTPM
Allen mouse:22.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 3620.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3331.3
2666 Male, age 74, left hemisphere 3583.4
1870 Female, age 42, unknown 3521.4
1830 Male, age 51, unknown 3482.6
2411 Female, age 72, unknown 3447.0
2828 Female, age 72, unknown 3341.6
1833 Male, age 53, unknown 3337.6
2019 Male, age 18, unknown 3271.8
1827 Male, age 72, unknown 3250.5
2586 Male, age 75, left hemisphere 3091.3
2219 Male, age 76, both hemispheres 2986.0
Dorsal raphe nucleus
nTPM: 3237.8
2750 Male, age 76, both hemispheres 3316.7
1828 Male, age 53, unknown 3289.5
2016 Female, age 72, unknown 3260.8
2047 Male, age 72, unknown 3164.4
2298 Female, age 72, unknown 3157.8
Inferior colliculus
nTPM: 3134.1
1890 Male, age 53, unknown 3187.4
1848 Female, age 42, unknown 3145.1
2097 Female, age 72, unknown 3117.8
2849 Male, age 72, unknown 3085.9
Median raphe nucleus
nTPM: 3152.4
2220 Male, age 76, midline 3152.4
Pedunculopontine tegmental nucleus
nTPM: 3459.9
2338 Male, age 61, both hemispheres 3839.3
2334 Male, age 80, both hemispheres 3390.2
1921 Female, age 85, both hemispheres 3150.3
Periaquaductal grey, anterior
nTPM: 3225.2
1947 Male, age 18, unknown 3373.8
1795 Male, age 51, unknown 3198.0
2502 Female, age 75, unknown 3103.8
Periaquaductal grey, dorsal
nTPM: 3093.2
1831 Male, age 72, unknown 3234.0
2464 Female, age 72, unknown 3097.6
2850 Male, age 76, both hemispheres 3046.5
1840 Male, age 53, unknown 2994.7
Periaquaductal grey, lateral
nTPM: 3108.1
2053 Male, age 18, unknown 3188.3
2272 Male, age 74, both hemispheres 3120.7
2140 Male, age 76, both hemispheres 3015.3
Pretectal area
nTPM: 3151.7
1817 Female, age 42, unknown 3250.4
1815 Male, age 53, unknown 3240.4
2825 Male, age 18, unknown 3236.0
2316 Male, age 76, right hemisphere 3202.3
2007 Male, age 72, unknown 3193.9
2273 Male, age 74, both hemispheres 3133.4
2407 Male, age 75, both hemispheres 3131.3
2224 Female, age 72, unknown 3113.0
1816 Male, age 51, unknown 3091.0
1944 Female, age 72, unknown 3088.5
2667 Female, age 75, unknown 2988.8
Red nucleus
nTPM: 3620.0
2503 Female, age 72, unknown 3975.1
2588 Male, age 74, left hemisphere 3883.0
2725 Female, age 75, unknown 3809.1
1821 Female, age 72, unknown 3756.5
1865 Male, age 51, unknown 3664.4
1954 Female, age 42, unknown 3648.1
1904 Male, age 53, unknown 3637.4
2227 Male, age 72, unknown 3594.0
2769 Male, age 72, unknown 3571.9
2823 Male, age 76, right hemisphere 3368.8
2785 Male, age 18, unknown 3277.7
2584 Male, age 75, left hemisphere 3254.1
Substantia nigra
nTPM: 3418.5
2590 Female, age 75, unknown 3560.2
2665 Male, age 74, both hemispheres 3535.7
1916 Female, age 42, unknown 3505.7
1851 Male, age 51, unknown 3470.1
2699 Male, age 18, unknown 3459.4
2409 Female, age 72, unknown 3417.3
2583 Male, age 75, right hemisphere 3343.9
2241 Male, age 72, unknown 3315.4
1889 Female, age 72, unknown 3310.9
1941 Male, age 53, unknown 3266.7
Superior colliculus
nTPM: 3255.5
2587 Male, age 74, left hemisphere 3551.2
1913 Female, age 42, unknown 3426.7
2668 Female, age 75, unknown 3349.9
1995 Male, age 72, unknown 3311.9
1839 Male, age 51, unknown 3240.7
1796 Male, age 53, unknown 3221.5
2261 Male, age 18, unknown 3154.1
1895 Male, age 76, right hemisphere 3152.4
2087 Female, age 72, unknown 3096.3
2664 Male, age 75, both hemispheres 3050.0
Ventral tegmental area
nTPM: 3443.9
2223 Female, age 72, unknown 3727.2
2410 Female, age 72, unknown 3509.3
2021 Male, age 53, unknown 3441.5
1915 Female, age 42, unknown 3438.7
2218 Male, age 76, both hemispheres 3282.4
1942 Male, age 51, unknown 3264.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5919.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5919.5
Samples: 139

Max nTPM: 18295.2
Min nTPM: 2132.8
Std nTPM: 2498.0
Median nTPM: 5280.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 18295.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 16910.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 12925.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 12483.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 11747.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 10955.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 10291.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 10046.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 9953.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 9950.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 9903.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.9
FF:10158-103A5 76 years, female 22.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 1492.1
Pig sample Sample description nTPM
Midbrain
nTPM: 1398.6
Samples: 4

Max nTPM: 2527.8
Min nTPM: 686.6
Sample A Female 2527.8
Sample B Female 1521.3
Sample C Male 858.6
Sample D Male 686.6
Periaqueductal gray
nTPM: 1042.3
Samples: 3

Max nTPM: 1194.3
Min nTPM: 838.0
Sample B Female 1194.3
Sample C Male 1094.6
Sample D Male 838.0
Substantia nigra
nTPM: 1492.1
Samples: 4

Max nTPM: 2019.2
Min nTPM: 1159.3
Sample A Female 2019.2
Sample B Female 1549.2
Sample C Male 1240.6
Sample D Male 1159.3
Superior colliculi
nTPM: 1096.2
Samples: 4

Max nTPM: 1426.5
Min nTPM: 921.4
Sample A Female 1426.5
Sample B Female 936.5
Sample C Male 1100.4
Sample D Male 921.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1260.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 1260.4
Samples: 4

Max nTPM: 1321.9
Min nTPM: 1209.4
Sample A Male 1281.4
Sample B Male 1209.4
Sample C Female 1229.0
Sample D Female 1321.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.9
512993 Antisense, RP_040809_02_F11, Mouse strain C57BL/6J (56 days, male) 26.4
77792010 Antisense, RP_070208_04_C12, Mouse strain C57BL/6J (56 days, male) 19.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.