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HMGN1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni
Consensus:53.3 nTPM
HPA:53.3 nTPM
GTEx:38.2 nTPM
FANTOM5:31.0 Scaled Tags Per Million
Pig:4.1 nTPM
Mouse:27.9 nTPM
Allen mouse:7.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048694Antibody CAB012260
Glial cells Not detectedHigh
Neuronal cells Not detectedNot detected




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 53.3
Sample id Sample description nTPM
Hippocampus
nTPM: 53.3
2529 Female, age 94, left hemisphere 55.5
1855 Male, age 76, left hemisphere 55.2
1898 Male, age 80, left hemisphere 53.4
2148 Female, age 91, left hemisphere 53.0
1911 Female, age 85, right hemisphere 52.5
2621 Female, age 67, right hemisphere 50.3
Dentate gyrus
nTPM: 50.7
2010 Male, age 76, both hemispheres 54.2
2530 Female, age 94, left hemisphere 51.8
2246 Female, age 85, both hemispheres 50.8
2528 Male, age 74, both hemispheres 50.5
2531 Female, age 67, both hemispheres 48.6
1927 Female, age 91, both hemispheres 48.5
Entorhinal gyrus
nTPM: 49.8
2117 Female, age 91, right hemisphere 54.7
1787 Male, age 76, left hemisphere 51.1
2613 Female, age 94, left hemisphere 48.6
1938 Female, age 85, left hemisphere 48.2
2686 Male, age 75, right hemisphere 48.2
2764 Male, age 80, right hemisphere 48.1
Hippocampus, CA1
nTPM: 51.1
2527 Male, age 74, both hemispheres 54.5
1873 Female, age 85, both hemispheres 52.7
2045 Male, age 76, both hemispheres 51.1
2082 Female, age 91, right hemisphere 48.8
2749 Male, age 80, left hemisphere 48.5
Hippocampus, CA2
nTPM: 51.3
2249 Male, age 74, both hemispheres 52.9
2113 Female, age 91, right hemisphere 52.7
1940 Female, age 85, left hemisphere 52.4
2437 Female, age 94, left hemisphere 50.6
1963 Male, age 80, left hemisphere 50.1
1892 Male, age 76, both hemispheres 49.4
Hippocampus, CA3
nTPM: 50.1
2436 Male, age 74, both hemispheres 52.2
1891 Female, age 85, both hemispheres 51.6
1867 Male, age 76, both hemispheres 50.5
2861 Female, age 67, both hemispheres 49.0
2137 Male, age 80, left hemisphere 48.9
2620 Female, age 94, left hemisphere 48.7
Parahippocampal cortex
nTPM: 50.7
2250 Female, age 67, right hemisphere 54.0
2018 Male, age 76, both hemispheres 53.7
2245 Female, age 91, both hemispheres 51.2
1990 Female, age 91, right hemisphere 50.7
2692 Male, age 74, both hemispheres 50.7
2532 Female, age 72, left hemisphere 49.7
1850 Male, age 80, both hemispheres 49.4
2622 Female, age 67, right hemisphere 49.4
1933 Female, age 85, both hemispheres 49.3
2693 Female, age 94, both hemispheres 49.2
Perirhinal gyrus
nTPM: 49.0
1847 Female, age 91, left hemisphere 49.8
1841 Female, age 85, right hemisphere 49.4
2521 Female, age 94, right hemisphere 49.4
2848 Male, age 76, right hemisphere 49.3
1794 Male, age 80, right hemisphere 47.1
Subiculum
nTPM: 51.2
2729 Female, age 91, right hemisphere 53.3
2042 Male, age 76, both hemispheres 52.1
2619 Male, age 74, both hemispheres 52.1
2438 Female, age 94, left hemisphere 51.3
1901 Male, age 80, both hemispheres 49.2
1977 Female, age 85, both hemispheres 49.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.2
Samples: 197

Max nTPM: 75.3
Min nTPM: 17.3
Std nTPM: 11.0
Median nTPM: 36.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 75.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 70.6
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 68.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 66.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 64.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 63.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 63.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 63.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 62.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 59.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 59.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.0
FF:10153-102I9 76 years, female 35.9
FF:10169-103B7 60 years, female 26.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.1
Samples: 4

Max nTPM: 7.4
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 5.0
Sample C Male 2.1
Sample D Male 7.4
Entorhinal cortex
nTPM: 2.2
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.7
Sample A Female 1.7
Sample B Female 2.1
Sample C Male 2.4
Sample D Male 2.6
Subiculum
nTPM: 3.0
Samples: 4

Max nTPM: 4.5
Min nTPM: 1.6
Sample A Female 1.6
Sample B Female 2.9
Sample C Male 2.9
Sample D Male 4.5
Ventral hippocampus
nTPM: 3.1
Samples: 4

Max nTPM: 4.0
Min nTPM: 1.9
Sample A Female 3.8
Sample B Female 2.8
Sample C Male 1.9
Sample D Male 4.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 27.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 22.9
Samples: 4

Max nTPM: 26.6
Min nTPM: 21.1
Sample A Male 21.8
Sample B Male 22.0
Sample C Female 26.6
Sample D Female 21.1
Hippocampal formation
nTPM: 28.0
Samples: 4

Max nTPM: 30.1
Min nTPM: 25.8
Sample A Male 30.1
Sample B Male 28.9
Sample C Female 25.8
Sample D Female 27.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.7
77932781 Antisense, RP_070219_02_C11, Mouse strain C57BL/6J (56 days, male) 8.0
77465018 Antisense, RP_070129_02_G10, Mouse strain C57BL/6J (56 days, male) 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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