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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:48.1 nTPM
HPA:48.1 nTPM
GTEx:59.0 nTPM
FANTOM5:72.9 Scaled Tags Per Million
Pig:26.5 nTPM
Mouse:17.2 nTPM
Allen mouse:14.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA003254Antibody CAB019381
Glial cells Not detectedLow
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.1
Sample id Sample description nTPM
Hippocampus
nTPM: 39.6
2529 Female, age 94, left hemisphere 45.9
1911 Female, age 85, right hemisphere 42.2
2621 Female, age 67, right hemisphere 41.0
1898 Male, age 80, left hemisphere 37.2
2148 Female, age 91, left hemisphere 36.8
1855 Male, age 76, left hemisphere 34.6
Dentate gyrus
nTPM: 39.2
2530 Female, age 94, left hemisphere 46.5
2010 Male, age 76, both hemispheres 44.9
2528 Male, age 74, both hemispheres 41.2
2246 Female, age 85, both hemispheres 35.7
2531 Female, age 67, both hemispheres 34.9
1927 Female, age 91, both hemispheres 32.2
Entorhinal gyrus
nTPM: 42.9
2117 Female, age 91, right hemisphere 59.0
2764 Male, age 80, right hemisphere 45.3
2613 Female, age 94, left hemisphere 39.4
1787 Male, age 76, left hemisphere 38.3
2686 Male, age 75, right hemisphere 38.1
1938 Female, age 85, left hemisphere 37.2
Hippocampus, CA1
nTPM: 35.4
2527 Male, age 74, both hemispheres 44.5
2082 Female, age 91, right hemisphere 39.9
1873 Female, age 85, both hemispheres 34.6
2749 Male, age 80, left hemisphere 32.3
2045 Male, age 76, both hemispheres 25.7
Hippocampus, CA2
nTPM: 40.5
2249 Male, age 74, both hemispheres 48.4
2437 Female, age 94, left hemisphere 44.7
1963 Male, age 80, left hemisphere 43.0
2113 Female, age 91, right hemisphere 42.5
1940 Female, age 85, left hemisphere 35.2
1892 Male, age 76, both hemispheres 29.4
Hippocampus, CA3
nTPM: 33.9
1891 Female, age 85, both hemispheres 44.8
1867 Male, age 76, both hemispheres 36.7
2436 Male, age 74, both hemispheres 36.5
2861 Female, age 67, both hemispheres 31.4
2137 Male, age 80, left hemisphere 28.2
2620 Female, age 94, left hemisphere 25.6
Parahippocampal cortex
nTPM: 39.5
2692 Male, age 74, both hemispheres 44.3
2532 Female, age 72, left hemisphere 43.3
1990 Female, age 91, right hemisphere 43.2
2250 Female, age 67, right hemisphere 41.7
1933 Female, age 85, both hemispheres 38.2
2018 Male, age 76, both hemispheres 37.8
2245 Female, age 91, both hemispheres 37.5
1850 Male, age 80, both hemispheres 36.8
2693 Female, age 94, both hemispheres 36.5
2622 Female, age 67, right hemisphere 35.4
Perirhinal gyrus
nTPM: 33.9
2521 Female, age 94, right hemisphere 37.7
1794 Male, age 80, right hemisphere 34.6
1847 Female, age 91, left hemisphere 34.6
1841 Female, age 85, right hemisphere 31.7
2848 Male, age 76, right hemisphere 30.9
Subiculum
nTPM: 48.1
2042 Male, age 76, both hemispheres 58.6
1977 Female, age 85, both hemispheres 49.1
1901 Male, age 80, both hemispheres 47.4
2619 Male, age 74, both hemispheres 46.3
2438 Female, age 94, left hemisphere 46.1
2729 Female, age 91, right hemisphere 41.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 59.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 59.0
Samples: 197

Max nTPM: 190.1
Min nTPM: 8.1
Std nTPM: 29.1
Median nTPM: 54.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 190.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 158.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 139.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 137.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 128.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 126.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 124.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 117.3
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 115.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 112.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 110.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 72.9
FF:10153-102I9 76 years, female 95.5
FF:10169-103B7 60 years, female 50.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 26.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 26.5
Samples: 4

Max nTPM: 40.2
Min nTPM: 11.3
Sample A Female 40.2
Sample B Female 20.7
Sample C Male 33.8
Sample D Male 11.3
Entorhinal cortex
nTPM: 19.2
Samples: 4

Max nTPM: 22.1
Min nTPM: 15.4
Sample A Female 15.4
Sample B Female 22.1
Sample C Male 20.0
Sample D Male 19.3
Subiculum
nTPM: 22.5
Samples: 4

Max nTPM: 32.3
Min nTPM: 16.3
Sample A Female 32.3
Sample B Female 24.4
Sample C Male 17.0
Sample D Male 16.3
Ventral hippocampus
nTPM: 24.6
Samples: 4

Max nTPM: 31.0
Min nTPM: 17.8
Sample A Female 26.9
Sample B Female 17.8
Sample C Male 31.0
Sample D Male 22.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 17.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 12.5
Samples: 4

Max nTPM: 15.5
Min nTPM: 9.9
Sample A Male 13.4
Sample B Male 11.1
Sample C Female 15.5
Sample D Female 9.9
Hippocampal formation
nTPM: 17.2
Samples: 4

Max nTPM: 24.0
Min nTPM: 11.8
Sample A Male 11.8
Sample B Male 13.8
Sample C Female 24.0
Sample D Female 19.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.4
2449 Antisense, RP_Baylor_103184, Mouse strain C57BL/6J (56 days, male) 14.4
2448 Antisense, RP_Baylor_103184, Mouse strain C57BL/6J (56 days, male) 9.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.