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IGHA1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:1.0 nTPM
HPA:1.0 nTPM
GTEx:5.7 nTPM
FANTOM5:0.0 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA001217Antibody HPA006013
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.6
2846 Female, age 79, unknown 0.9
1781 Male, age 74, unknown 0.7
1857 Female, age 85, left hemisphere 0.7
2289 Male, age 61, right hemisphere 0.6
2481 Female, age 94, left hemisphere 0.6
2290 Female, age 72, unknown 0.5
1854 Male, age 80, left hemisphere 0.4
2288 Male, age 75, left hemisphere 0.4
Claustrum
nTPM: 0.6
2292 Female, age 85, both hemispheres 1.2
2392 Female, age 94, both hemispheres 0.8
2568 Male, age 61, both hemispheres 0.7
1956 Male, age 74, unknown 0.6
2196 Female, age 79, unknown 0.6
2284 Female, age 91, both hemispheres 0.6
2645 Female, age 72, unknown 0.6
2198 Male, age 80, both hemispheres 0.4
2491 Male, age 75, both hemispheres 0.4
Globus pallidus, externus
nTPM: 0.8
2395 Male, age 75, both hemispheres 1.5
2772 Female, age 79, unknown 1.0
2567 Female, age 72, unknown 0.6
2646 Male, age 61, right hemisphere 0.6
1996 Male, age 80, right hemisphere 0.5
Globus pallidus, internus
nTPM: 0.6
2037 Male, age 80, right hemisphere 0.8
2111 Female, age 85, right hemisphere 0.7
1818 Male, age 74, unknown 0.5
2483 Female, age 94, right hemisphere 0.5
2566 Female, age 72, unknown 0.5
2778 Female, age 91, both hemispheres 0.5
2287 Male, age 75, right hemisphere 0.4
Nucleus accumbens
nTPM: 0.5
1806 Female, age 85, left hemisphere 0.7
1783 Male, age 74, unknown 0.6
2824 Male, age 61, right hemisphere 0.6
1856 Female, age 91, right hemisphere 0.5
2391 Female, age 94, left hemisphere 0.5
2698 Female, age 72, unknown 0.5
2732 Male, age 80, right hemisphere 0.5
2286 Male, age 75, left hemisphere 0.4
Nucleus basalis of Meynert
nTPM: 0.8
2821 Male, age 75, both hemispheres 1.5
2484 Female, age 94, left hemisphere 0.6
2569 Male, age 61, both hemispheres 0.6
2393 Male, age 80, right hemisphere 0.5
Nucleus of the diagonal band
nTPM: 0.5
2029 Male, age 61, right hemisphere 0.6
1979 Male, age 74, unknown 0.5
2195 Female, age 85, both hemispheres 0.5
1812 Female, age 91, both hemispheres 0.4
2775 Male, age 80, right hemisphere 0.4
Olfactory tubercle
nTPM: 1.0
1846 Male, age 80, right hemisphere 2.4
2487 Female, age 94, left hemisphere 0.5
1998 Female, age 91, both hemispheres 0.4
2856 Male, age 75, right hemisphere 0.4
Putamen
nTPM: 0.8
1937 Female, age 91, right hemisphere 1.3
2466 Female, age 79, unknown 1.3
2489 Female, age 72, unknown 1.0
1829 Male, age 74, unknown 0.7
2482 Female, age 94, left hemisphere 0.6
2647 Male, age 75, left hemisphere 0.5
1838 Male, age 80, right hemisphere 0.4
Septal nuclei
nTPM: 0.8
2199 Male, age 80, right hemisphere 2.2
2394 Male, age 61, left hemisphere 1.0
2059 Female, age 85, both hemispheres 0.6
1960 Male, age 74, unknown 0.5
2031 Female, age 72, unknown 0.5
2629 Female, age 94, right hemisphere 0.5
2009 Female, age 91, both hemispheres 0.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 5.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.7
Samples: 246

Max nTPM: 38.0
Min nTPM: 0.0
Std nTPM: 4.4
Median nTPM: 1.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 38.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 31.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 25.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 23.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 18.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 18.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 16.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 13.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 9.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 8.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 8.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 5.7
Samples: 246

Max nTPM: 828.1
Min nTPM: 0.0
Std nTPM: 52.6
Median nTPM: 1.2
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 828.1
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 31.4
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 24.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 22.3
GTEX-145LS-0011-R6b-SM-5PNWL 60-69 years, female 17.9
GTEX-14BMV-0011-R6b-SM-5YY9I 50-59 years, male 17.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 14.8
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 14.7
GTEX-PWO3-0011-R6A-SM-2I5F3 60-69 years, female 14.5
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 9.5
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 9.2
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Brain - Putamen (basal ganglia)
Average nTPM: 3.6
Samples: 205

Max nTPM: 59.5
Min nTPM: 0.0
Std nTPM: 6.1
Median nTPM: 2.1
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 59.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 51.3
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 34.2
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 14.3
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 13.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 11.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 11.5
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 11.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 11.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 11.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 10.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.